suba logo
AT4G27440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protochlorophyllide oxidoreductase B
Curator
Summary (TAIR10)		 light-dependent NADPH:protochlorophyllide oxidoreductase B
Computational
Description (TAIR10)		 protochlorophyllide oxidoreductase B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 19396 Blast hits to 19385 proteins in 2086 species: Archae - 175; Bacteria - 10514; Metazoa - 1820; Fungi - 1776; Plants - 1038; Viruses - 0; Other Eukaryotes - 4073 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G27440-MONOMERBioCyc:ARA:GQT-2099-MONOMERBioGrid:14140BRENDA:1.3.1.33
EC:1.3.1.33eggNOG:COG1028eggNOG:KOG1208EMBL:AK317009
EMBL:AL078467EMBL:AL161571EMBL:AY042883EMBL:AY054206
EMBL:AY081465EMBL:AY087574EMBL:CP002687EMBL:U29785
EnsemblPlants:AT4G27440EnsemblPlants:AT4G27440.1EnsemblPlants:AT4G27440.2entrez:828853
Gene3D:3.40.50.720GeneID:828853Genevisible:P21218GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009707GO:GO:0009723
GO:GO:0009941GO:GO:0015979GO:GO:0015995GO:GO:0016020
GO:GO:0016630Gramene:AT4G27440.1Gramene:AT4G27440.2gramene_pathway:1.3.1.33
gramene_pathway:CHLOROPHYLL-SYNhmmpanther:PTHR24322hmmpanther:PTHR24322:SF393InParanoid:P21218
IntAct:P21218InterPro:IPR002347InterPro:IPR005979InterPro:IPR016040
KEGG:00860+1.3.1.33KEGG:ath:AT4G27440KO:K00218MINT:MINT-8300916
OMA:RFKREHSPANTHER:PTHR24322PaxDb:P21218Pfam:P21218
Pfam:PF00106PhylomeDB:P21218PIR:T08936PRIDE:P21218
PRINTS:PR00081PRO:PR:P21218ProteinModelPortal:P21218Proteomes:UP000006548
RefSeq:NP_001031731.1RefSeq:NP_194474.1SMR:P21218STRING:3702.AT4G27440.1
SUPFAM:SSF51735TAIR:AT4G27440tair10-symbols:PORBTIGRfam:TIGR01289
TIGRFAMs:TIGR01289UniGene:At.23416UniGene:At.75221UniPathway:UPA00668
UniProt:P21218
Coordinates (TAIR10) chr4:+:13725648..13727107
Molecular Weight (calculated) 43361.60 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.20
Length 401 amino acids
Sequence (TAIR10)
(BLAST) 		001: MALQAASLVS SAFSVRKDAK LNASSSSFKD SSLFGASITD QIKSEHGSSS LRFKREQSLR NLAIRAQTAA TSSPTVTKSV DGKKTLRKGN VVVTGASSGL
101: GLATAKALAE TGKWNVIMAC RDFLKAERAA KSVGMPKDSY TVMHLDLASL DSVRQFVDNF RRTETPLDVL VCNAAVYFPT AKEPTYSAEG FELSVATNHL
201: GHFLLARLLL DDLKKSDYPS KRLIIVGSIT GNTNTLAGNV PPKANLGDLR GLAGGLNGLN SSAMIDGGDF DGAKAYKDSK VCNMLTMQEF HRRFHEETGV
301: TFASLYPGCI ASTGLFREHI PLFRALFPPF QKYITKGYVS ETESGKRLAQ VVSDPSLTKS GVYWSWNNAS ASFENQLSEE ASDVEKARKV WEISEKLVGL
401: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)