suba logo
AT4G26900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HIS HF
Curator
Summary (TAIR10)
encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway
Computational
Description (TAIR10)
HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G26900-MONOMERBioCyc:MetaCyc:AT4G26900-MONOMEREC:2.4.2.-EC:4.1.3.-eggNOG:COG0107eggNOG:COG0118eggNOG:KOG0623
EMBL:AB006210EMBL:AB016783EMBL:AK118498EMBL:AL035440EMBL:AL161566EMBL:BT005923EMBL:CP002687
EnsemblPlants:AT4G26900EnsemblPlants:AT4G26900.1entrez:828797Gene3D:3.20.20.70Gene3D:3.40.50.880GeneID:828797Genevisible:Q9SZ30
GO:GO:0000105GO:GO:0000107GO:GO:0006541GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0016833
Gramene:AT4G26900.1gramene_pathway:2.4.2.-gramene_pathway:HISTSYN-PWYHAMAP:MF_00278hmmpanther:PTHR21235hmmpanther:PTHR21235:SF2HOGENOM:HOG000162393
InParanoid:Q9SZ30InterPro:IPR004651InterPro:IPR006062InterPro:IPR010139InterPro:IPR011060InterPro:IPR013785InterPro:IPR014640
InterPro:IPR017926InterPro:IPR029062iPTMnet:Q9SZ30KEGG:00230+2.4.2.-KEGG:00514+2.4.2.-KEGG:00620+4.1.3.-KEGG:00624+4.1.3.-
KEGG:ath:AT4G26900KO:K01663OMA:CIDKDGTPaxDb:Q9SZ30Pfam:PF00117Pfam:PF00977Pfam:Q9SZ30
Pfscan:PS51273PhylomeDB:Q9SZ30PIR:T04813PIR:T48876PIRSF:PIRSF036936PRIDE:Q9SZ30PRO:PR:Q9SZ30
PROSITE:PS51273ProteinModelPortal:Q9SZ30Proteomes:UP000006548RefSeq:NP_194420.1SMR:Q9SZ30STRING:3702.AT4G26900.1SUPFAM:SSF51366
SUPFAM:SSF52317TAIR:AT4G26900tair10-symbols:AT-HFtair10-symbols:HISN4TIGRfam:TIGR00735TIGRfam:TIGR01855TIGRFAMs:TIGR00735
TIGRFAMs:TIGR01855UniGene:At.48904UniGene:At.71008UniPathway:UPA00031UniProt:Q9SZ30
Coordinates (TAIR10) chr4:+:13515514..13519608
Molecular Weight (calculated) 64196.00 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.21
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MEATAAPFSS IVSSRQNFSS SSSIRASSPA SLFLSQKSIG NVNRKFKSPR SLSVRASSTS DSVVTLLDYG AGNVRSIRNA LRHLGFSIKD VQTPGDILNA
101: DRLIFPGVGA FAPAMDVLNR TGMAEALCKY IENDRPFLGI CLGLQLLFDS SEENGPVKGL GVIPGIVGRF DASAGIRVPH IGWNALQVGK DSEILDDVGN
201: RHVYFVHSYR AIPSDENKDW ISSTCNYGES FISSIRRGNV HAVQFHPEKS GEVGLSVLRR FLHPKLPATQ KPMEGKASKL AKRVIACLDV RTNDKGDLVV
301: TKGDQYDVRE QSNENEVRNL GKPVDLAGQY YKDGADEISF LNITGFRDFP LGDLPMIQVL RQTSKNVFVP LTVGGGIRDF TDASGRYYSS LEVAAEYFRS
401: GADKISIGSD AVSAAEEFIK SGVKTGKSSL EQISRVYGNQ AVVVSIDPRR VYVNHPDDVP YKVIRVTNPG PNGEEYAWYQ CTVSGGREGR PIGAFELAKA
501: VEELGAGEIL LNCIDCDGQG KGFDIDLVKL ISDSVGIPVI ASSGAGTPDH FSEVFEKTNA SAALAAGIFH RKEVPIQSVK EHLQEERIEV RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)