AT4G25550.1::SUBA5

AT4G25550.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
cytosol 0.980
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:32219438 (2020): cytosol PMID:31520498 (2020): mitochondrion PMID:30961429 (2019): nucleus PMID:28865150 (2017): extracellular region plant-type cell wall PMID:26572690 (2016): extracellular region plant-type cell wall PMID:24134884 (2013): cytoskeleton microtubules PMID:22550958 (2012): plastid PMID:19334764 (2009): plasma membrane	PMID:20706207 (2010): AT2G42260.1:None: PMID:20706207 (2010): AT1G51650.1:None: PMID:20706207 (2010): AT2G43140.1:None: PMID:20706207 (2010): AT5G61220.1:None: PMID:20706207 (2010): AT3G56150.1:None: PMID:20706207 (2010): AT1G14620.1:None: PMID:20706207 (2010): AT5G60790.1:None: PMID:20706207 (2010): AT3G05190.1:None: PMID:20706207 (2010): AT5G12380.1:None: PMID:20706207 (2010): AT4G26870.1:None: PMID:20706207 (2010): AT3G22310.1:None: PMID:20706207 (2010): AT4G24820.1:None: PMID:20706207 (2010): AT4G28230.1:None: PMID:20706207 (2010): AT3G16980.1:None: PMID:20706207 (2010): AT3G04620.1:None: PMID:20706207 (2010): AT1G61870.1:None: PMID:20706207 (2010): AT3G62840.1:None: PMID:20706207 (2010): AT2G47640.1:None: PMID:20706207 (2010): AT1G09760.1:None: PMID:20706207 (2010): AT3G49430.1:None: PMID:20706207 (2010): AT2G32730.1:None: PMID:20706207 (2010): AT3G48150.1:None: PMID:20706207 (2010): AT3G16320.1:None: PMID:20706207 (2010): AT1G78770.1:None: PMID:20706207 (2010): AT5G05560.1:None: PMID:20706207 (2010): AT4G19210.1:None: PMID:20706207 (2010): AT1G06590.1:None: PMID:20706207 (2010): AT2G04660.1:None: PMID:18479511 (2008): AT1G30460.1:Y2H: PMID:18479511 (2008): AT5G58040.1:Y2H:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT4G26410.1 mitochondrion [7.17]
AT5G66140.1 cytosol, nucleus [7.02]
AT1G77440.1 cytosol, nucleus [6.34]
AT3G18380.1 nucleus [6.3]
AT3G22630.1 cytosol, nucleus [5.95]
AT5G49510.1 cytosol [5.85]
AT3G51260.1 cytosol, nucleus [5.83]
AT5G58290.1 cytosol, nucleus [5.79]
AT1G64520.1 cytosol, nucleus [5.73]
AT3G07480.1 mitochondrion [5.73]

AT5G60790.1 cytosol
AT5G12380.1 cytosol
AT4G26870.1 cytosol
AT4G19210.1 cytosol
AT3G05190.1 cytosol
AT5G61220.1 mitochondrion
AT1G14620.1 mitochondrion
AT1G51650.1 mitochondrion
AT1G61870.1 mitochondrion
AT3G22310.1 mitochondrion
AT3G04620.1 cytosol, mitochondrion
AT3G16980.1 nucleus
AT5G05560.1 nucleus
AT4G28230.1 nucleus
AT3G62840.1 nucleus
AT3G49430.1 nucleus
AT3G48150.1 nucleus
AT1G06590.1 nucleus
AT3G16320.1 nucleus
AT2G47640.1 nucleus
AT2G43140.1 nucleus
AT2G42260.1 nucleus
AT2G04660.1 nucleus
AT1G78770.1 nucleus
AT1G09760.1 nucleus
AT3G56150.1 cytosol, nucleus
AT4G24820.1 cytosol, nucleus
AT2G32730.1 cytosol, nucleus

Description (TAIR10)

protein_coding : Cleavage/polyadenylation specificity factor, 25kDa subunit

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

Protein Annotations

BioGrid:13947	eggNOG:ENOG410XS8Z	eggNOG:KOG1689	EMBL:AK118070
EMBL:AK220576	EMBL:AK228476	EMBL:AL022197	EMBL:AL161563
EMBL:BT005519	EMBL:CP002687	EnsemblPlants:AT4G25550	EnsemblPlants:AT4G25550.1
entrez:828660	GeneID:828660	Genevisible:Q8GXS3	GO:GO:0003729
GO:GO:0005849	GO:GO:0006378	GO:GO:0016787	GO:GO:0046872
hmmpanther:PTHR13047	HOGENOM:HOG000161320	InParanoid:Q8GXS3	IntAct:Q8GXS3
InterPro:IPR015797	InterPro:IPR016706	KEGG:ath:AT4G25550	KO:K14397
OMA:GDCLAQW	PANTHER:PTHR13047	PaxDb:Q8GXS3	Pfam:PF13869
Pfam:Q8GXS3	PhylomeDB:Q8GXS3	PIR:C85295	PIR:T05792
PIRSF:PIRSF017888	PRIDE:Q8GXS3	PRO:PR:Q8GXS3	ProteinModelPortal:Q8GXS3
Proteomes:UP000006548	Reactome:R-ATH-72163	RefSeq:NP_194285.2	SMR:Q8GXS3
STRING:3702.AT4G25550.1	SUPFAM:SSF55811	TAIR:AT4G25550	UniGene:At.44085
UniProt:Q8GXS3

Coordinates (TAIR10)

chr4:+:13048519..13050873

Molecular Weight (calculated)

22830.90 Da

IEP (calculated)

9.48

GRAVY (calculated)

-0.33

Length

200 amino acids

Sequence (TAIR10)
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS