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AT4G24620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoglucose isomerase 1
Curator
Summary (TAIR10)
The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.
Computational
Description (TAIR10)
phosphoglucose isomerase 1 (PGI1); FUNCTIONS IN: glucose-6-phosphate isomerase activity; INVOLVED IN: positive regulation of flower development, starch metabolic process; LOCATED IN: cytosol, chloroplast stroma, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglucose isomerase, conserved site (InterPro:IPR018189), Phosphoglucose isomerase (PGI) (InterPro:IPR001672); BEST Arabidopsis thaliana protein match is: Sugar isomerase (SIS) family protein (TAIR:AT5G42740.1); Has 10859 Blast hits to 10857 proteins in 3395 species: Archae - 60; Bacteria - 6690; Metazoa - 541; Fungi - 161; Plants - 999; Viruses - 0; Other Eukaryotes - 2408 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G24620-MONOMEREC:5.3.1.9eggNOG:COG0166eggNOG:KOG2446EMBL:AF120494EMBL:AK227111EMBL:AL035356
EMBL:AL161561EMBL:BT000953EMBL:CP002687EnsemblPlants:AT4G24620EnsemblPlants:AT4G24620.1entrez:828564GeneID:828564
Genevisible:Q8H103GO:GO:0004347GO:GO:0005829GO:GO:0005982GO:GO:0006094GO:GO:0006096GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009911GO:GO:0009941gramene_pathway:5.3.1.9gramene_pathway:GLYCOLYSISgramene_pathway:PWY-5659
gramene_pathway:PWY-621gramene_pathway:PWY-622gramene_pathway:PWYQT-4428HAMAP:MF_00473hmmpanther:PTHR11469hmmpanther:PTHR11469:SF9HOGENOM:HOG000131425
InParanoid:Q8H103InterPro:IPR001672InterPro:IPR018189iPTMnet:Q8H103KEGG:00010+5.3.1.9KEGG:00030+5.3.1.9KEGG:00500+5.3.1.9
KEGG:00520+5.3.1.9KEGG:ath:AT4G24620KO:K01810OMA:GEKDMVVPANTHER:PTHR11469PaxDb:Q8H103Pfam:PF00342
Pfam:Q8H103Pfscan:PS51463PhylomeDB:Q8H103PIR:T05572PRIDE:Q8H103PRINTS:PR00662PRO:PR:Q8H103
PROSITE:PS00174PROSITE:PS51463ProteinModelPortal:Q8H103Proteomes:UP000006548RefSeq:NP_001078444.1RefSeq:NP_194193.2scanprosite:PS00174
SMR:Q8H103STRING:3702.AT4G24620.1SUPFAM:SSF53697TAIR:AT4G24620tair10-symbols:PGItair10-symbols:PGI1UniGene:At.25158
UniPathway:UPA00109UniPathway:UPA00138UniProt:Q8H103
Coordinates (TAIR10) chr4:-:12708972..12712610
Molecular Weight (calculated) 67052.10 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.16
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSGLYSS SPSLKPAKNH SFKALPAQSR DSFSFPHTSK PTNLPLTLSS ARSVARDISH ADSKKELLKD PDALWKRYLD WFYQQKELGL YLDISRVGFT
101: DEFVAEMEPR FQAAFKAMED LEKGSIANPD EGRMVGHYWL RNSKLAPKPT LKTLIENTLD SICAFSDDII SGKIKPPSSP EGRFTQILSV GIGGSALGPQ
201: FVAEALAPDN PPLKIRFIDN TDPAGIDHQI AQLGPELAST LVVVISKSGG TPETRNGLLE VQKAFREAGL NFAKQGVAIT QENSLLDNTA RIEGWLARFP
301: MYDWVGGRTS IMSAVGLLPA ALQGINVREM LTGAALMDEA TRTTSIKNNP AALLAMCWYW ASNGVGSKDM VVLPYKDSLL LFSRYLQQLV MESLGKEFDL
401: DGNTVNQGLT VYGNKGSTDQ HAYIQQLRDG VHNFFATFIE VLRDRPPGHD WELEPGVTCG DYLFGMLQGT RSALYANGRE SISVTIQEVT PTSVGAIIAL
501: YERAVGLYAS IVNINAYHQP GVEAGKKAAA EVLALQKRVL SVLNEATCKD PVEPLTLEEI ADRCHAPEEI EMIYKIIAHM SANDRVLIAE GNCGSPRSIK
601: VYLGECNVDD LYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)