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AT4G21210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30135097 (2018): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PPDK regulatory protein
Curator
Summary (TAIR10)
Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).
Computational
Description (TAIR10)
PPDK regulatory protein (RP1); FUNCTIONS IN: protein kinase activity, phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate Pi dikinase regulator (InterPro:IPR017409), Protein of unknown function DUF299, phosphotransferase, predicted (InterPro:IPR005177); BEST Arabidopsis thaliana protein match is: PPDK regulatory protein 2 (TAIR:AT3G01200.1); Has 4488 Blast hits to 4488 proteins in 1425 species: Archae - 0; Bacteria - 3133; Metazoa - 4; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 1288 (source: NCBI BLink).
Protein Annotations
BRENDA:2.7.11.32BRENDA:2.7.4.27EC:2.7.11.32EC:2.7.4.27
eggNOG:COG1806eggNOG:ENOG410IFEVEMBL:AK316730EMBL:AL021960
EMBL:AL161554EMBL:CP002687EnsemblPlants:AT4G21210EnsemblPlants:AT4G21210.1
entrez:827869ExpressionAtlas:O49562GeneID:827869Genevisible:O49562
GO:GO:0004672GO:GO:0004674GO:GO:0004721GO:GO:0005524
GO:GO:0006468GO:GO:0006470GO:GO:0009507GO:GO:0009570
GO:GO:0016776HAMAP:MF_00921hmmpanther:PTHR31756hmmpanther:PTHR31756:SF3
HOGENOM:HOG000218052InParanoid:O49562InterPro:IPR005177InterPro:IPR017409
InterPro:IPR026565KEGG:ath:AT4G21210OMA:NRAMPRIPaxDb:O49562
Pfam:O49562Pfam:PF03618PhylomeDB:O49562PIR:T04952
PIRSF:PIRSF038149PRIDE:O49562PRO:PR:O49562ProteinModelPortal:O49562
Proteomes:UP000006548RefSeq:NP_001031686.1RefSeq:NP_193853.1STRING:3702.AT4G21210.1
TAIR:AT4G21210tair10-symbols:ATRP1tair10-symbols:RP1UniGene:At.20726
UniProt:O49562
Coordinates (TAIR10) chr4:+:11307002..11308587
Molecular Weight (calculated) 43686.00 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.32
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLSAMKLQ GRPPPISSNL NPNSKPAGSD SVSLNASEPG SERKPRKFSS QLNRWNRART LRSGAKLDST ITNGSNNTTG PMRPIESSSR TDVSTLDSDV
101: SSSSNGVSEA DMTAAKSIYI VSDGTGWTAE HAVNAALGQF DYCLVDRGCP VNTHLFSGIE DGEKLMEIIK QAAREGAMVI YTLADPSMAE ATMRACKLWK
201: IPSLDILGPI TESISSHLGT NPSGLSRGIT NSSLNEDYFK RIEAIEFTIK HDDGALPENL EKADIVLVGV SRTGKTPLST YLAQKGYKVS NVPIVNGVDL
301: PKTLFEIDPR KVFGLMINPL VLQGIREARA KSLGLGSSFK TKYSELGSVK EELELAKKIF AENPTWPVIE VTESAIEETA AVVLRLYDER QSNRAMPRIS
401: KSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)