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AT4G20360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:25587034 (2015): cytosol
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15496452 (2005): nucleus
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:14505352 (2003): nucleus
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At4g20360-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog E1B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:13075eggNOG:COG0050eggNOG:KOG0460EMBL:AF410329
EMBL:AF419609EMBL:AL080253EMBL:AL161552EMBL:AY074355
EMBL:BT000687EMBL:BT000699EMBL:BT000998EMBL:BT002642
EMBL:CP002687EMBL:X52256EnsemblPlants:AT4G20360EnsemblPlants:AT4G20360.1
entrez:827784Gene3D:3.40.50.300GeneID:827784Genevisible:P17745
GO:GO:0003746GO:GO:0003924GO:GO:0005525GO:GO:0005634
GO:GO:0005730GO:GO:0005739GO:GO:0009295GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009941GO:GO:0016020GO:GO:0048046GO:GO:0070125
Gramene:AT4G20360.1HAMAP:MF_00118_BHOGENOM:HOG000229290InParanoid:P17745
IntAct:P17745InterPro:IPR000795InterPro:IPR004160InterPro:IPR004161
InterPro:IPR004541InterPro:IPR005225InterPro:IPR009000InterPro:IPR009001
InterPro:IPR027417InterPro:IPR031157iPTMnet:P17745KEGG:ath:AT4G20360
KO:K02358MINT:MINT-8061371OMA:LCPAISTPaxDb:P17745
Pfam:P17745Pfam:PF00009Pfam:PF03143Pfam:PF03144
Pfscan:PS51722PhylomeDB:P17745PIR:S09152PRIDE:P17745
PRINTS:PR00315PRO:PR:P17745PROSITE:PS00301PROSITE:PS51722
ProteinModelPortal:P17745Proteomes:UP000006548RefSeq:NP_193769.1scanprosite:PS00301
SMR:P17745STRING:3702.AT4G20360.1SUPFAM:SSF50447SUPFAM:SSF50465
SUPFAM:SSF52540SWISS-2DPAGE:P17745TAIR:AT4G20360tair10-symbols:ATRAB8D
tair10-symbols:ATRABE1Btair10-symbols:RABE1bTIGRfam:TIGR00231TIGRfam:TIGR00485
TIGRFAMs:TIGR00231TIGRFAMs:TIGR00485UniGene:At.24137UniGene:At.71279
UniGene:At.71947UniGene:At.75368UniProt:P17745
Coordinates (TAIR10) chr4:+:10990036..10991466
Molecular Weight (calculated) 51633.20 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.12
Length 476 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)