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AT4G17560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L19 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT5G47190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12764eggNOG:COG0335eggNOG:KOG1698EMBL:AL161546EMBL:AY062821EMBL:AY081625EMBL:AY086121
EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17560EnsemblPlants:AT4G17560.1entrez:827471GeneID:827471Genevisible:Q8W463
GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016020
GO:GO:0019843Gramene:AT4G17560.1hmmpanther:PTHR15680hmmpanther:PTHR15680:SF10HOGENOM:HOG000016266InParanoid:Q8W463InterPro:IPR001857
InterPro:IPR008991KEGG:ath:AT4G17560KO:K02884OMA:LSCAPSMPANTHER:PTHR15680PaxDb:Q8W463Pfam:PF01245
Pfam:Q8W463PhylomeDB:Q8W463PIR:C71445PRIDE:Q8W463PRINTS:PR00061PRO:PR:Q8W463ProteinModelPortal:Q8W463
Proteomes:UP000006548RefSeq:NP_567531.1SMR:Q8W463STRING:3702.AT4G17560.1SUPFAM:SSF50104TAIR:AT4G17560TIGRfam:TIGR01024
TIGRFAMs:TIGR01024UniGene:At.27419UniProt:Q8W463
Coordinates (TAIR10) chr4:+:9780343..9781752
Molecular Weight (calculated) 25520.20 Da
IEP (calculated) 10.68
GRAVY (calculated) -0.32
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSFHRLPQ ALHMIPRNPT QSSKNLGFSS FLSCAPSMDS RISVSRLSLN HPGSKFGFSL DTRVRNEFIV RAEEGNTEAE SEEFVAEIAD TEGNVEEVVE
101: AKPTRKPRIK LGDVMGILNQ KAIEVAEKVR PVPEIRTGDI VEIKLEVPEN KRRLSIYKGI VMSRQNAGIH TTIRIRRIIA GIGVEIVFPI YSPNIKEIKV
201: VSHRKVRRAR LYYLRDKLPR LSTFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)