AT4G13830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ-like 20 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
DnaJ-like protein (J20); nuclear gene | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNAJ-like 20 (J20); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 22675 Blast hits to 22673 proteins in 3230 species: Archae - 176; Bacteria - 9459; Metazoa - 3759; Fungi - 2142; Plants - 2075; Viruses - 8; Other Eukaryotes - 5056 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8011518..8011985 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 18289.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 155 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKCYKSSSIL STNHHPFFYK QQPISSLQPT SIPTTISYPT RTRFSSTRIQ SRLTHDDPVK QSEDLSFYDL LGVTESVTLP EIKQAYKQLA RKYHPDVSPP 101: DRVEEYTDRF IRVQEAYETL SDPRRRVLYD RDLSMGFSFS FSGRRQNRYD QVINY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)