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AT4G12400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.842
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : stress-inducible protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 51058 Blast hits to 20866 proteins in 1460 species: Archae - 1964; Bacteria - 17234; Metazoa - 10505; Fungi - 2946; Plants - 4231; Viruses - 7; Other Eukaryotes - 14171 (source: NCBI BLink).
Protein Annotations
BioGrid:12147eggNOG:ENOG410XTCJeggNOG:KOG0548EMBL:AK317040EMBL:AL080318EMBL:AL161534EMBL:AY140001
EMBL:CP002687EnsemblPlants:AT4G12400EnsemblPlants:AT4G12400.1EnsemblPlants:AT4G12400.2entrez:826849ExpressionAtlas:Q9STH1Gene3D:1.25.40.10
GeneID:826849Genevisible:Q9STH1GO:GO:0005634GO:GO:0005737GO:GO:0009408GO:GO:0009644GO:GO:0010286
GO:GO:0042542GO:GO:0051131GO:GO:0051879GO:GO:0070678hmmpanther:PTHR22904hmmpanther:PTHR22904:SF371HOGENOM:HOG000186562
InParanoid:Q9STH1InterPro:IPR001440InterPro:IPR006636InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734iPTMnet:Q9STH1
KEGG:ath:AT4G12400KO:K09553ncoils:CoilOMA:SKCRELCPaxDb:Q9STH1Pfam:PF00515Pfam:PF13181
Pfam:PF13414Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9STH1PIR:T48150PRIDE:Q9STH1PRO:PR:Q9STH1
PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9STH1Proteomes:UP000006548RefSeq:NP_001031620.1RefSeq:NP_192977.2SMART:SM00028
SMART:SM00727SMR:Q9STH1STRING:3702.AT4G12400.2SUPFAM:SSF48452TAIR:AT4G12400tair10-symbols:Hop3UniGene:At.33478
UniProt:F4JQM6UniProt:Q8L724
Coordinates (TAIR10) chr4:-:7339024..7341239
Molecular Weight (calculated) 60450.30 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.89
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEAKSKGN AAFSSGDYAT AITHFTEAIN LSPTNHILYS NRSASYASLH RYEEALSDAK KTIELKPDWS KGYSRLGAAF IGLSKFDEAV DSYKKGLEID
101: PSNEMLKSGL ADASRSRVSS KSNPFVDAFQ GKEMWEKLTA DPGTRVYLEQ DDFVKTMKEI QRNPNNLNLY MKDKRVMKAL GVLLNVKFGG SSGEDTEMKE
201: ADERKEPEPE MEPMELTEEE RQKKERKEKA LKEKGEGNVA YKKKDFGRAV EHYTKAMELD DEDISYLTNR AAVYLEMGKY EECIEDCDKA VERGRELRSD
301: FKMIARALTR KGSALVKMAR CSKDFEPAIE TFQKALTEHR NPDTLKKLND AEKVKKELEQ QEYFDPTIAE EEREKGNGFF KEQKYPEAVK HYSEAIKRNP
401: NDVRAYSNRA ACYTKLGALP EGLKDAEKCI ELDPSFTKGY SRKGAIQFFM KEYDKAMETY QEGLKHDPKN QEFLDGVRRC VEQINKASRG DLTPEELKER
501: QAKAMQDPEV QNILSDPVMR QVKAVASIVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)