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AT4G09800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : S18 ribosomal protein
Curator
Summary (TAIR10)
encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex
Computational
Description (TAIR10)
S18 ribosomal protein (RPS18C); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit, nucleolus, cell wall, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S18 family (TAIR:AT1G22780.1); Has 7974 Blast hits to 7971 proteins in 2923 species: Archae - 237; Bacteria - 5081; Metazoa - 352; Fungi - 177; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).
Protein Annotations
BioGrid:11868BioGrid:24123BioGrid:25532eggNOG:COG0099
eggNOG:KOG3311EMBL:AC003979EMBL:AC015446EMBL:AC079286
EMBL:AF370463EMBL:AF386941EMBL:AF411781EMBL:AL049482
EMBL:AL161515EMBL:AY034965EMBL:AY064680EMBL:AY070029
EMBL:AY086334EMBL:AY086800EMBL:AY087428EMBL:BT006539
EMBL:CP002684EMBL:CP002687EMBL:Y12227EMBL:Z23165
EMBL:Z28701EMBL:Z28702EMBL:Z28962EnsemblPlants:AT1G22780.1
EnsemblPlants:AT1G34030.1EnsemblPlants:AT4G09800EnsemblPlants:AT4G09800.1entrez:826569
entrez:838884entrez:840300ExpressionAtlas:P34788Gene3D:4.10.910.10
GeneID:826569GeneID:838884GeneID:840300Genevisible:P34788
GO:GO:0003735GO:GO:0005618GO:GO:0005730GO:GO:0005773
GO:GO:0005774GO:GO:0005829GO:GO:0005840GO:GO:0005886
GO:GO:0006413GO:GO:0009506GO:GO:0016020GO:GO:0019843
GO:GO:0022626GO:GO:0022627Gramene:AT1G22780.1Gramene:AT1G34030.1
Gramene:AT4G09800.1HAMAP:MF_01315hmmpanther:PTHR10871hmmpanther:PTHR10871:SF6
HOGENOM:HOG000039877InParanoid:P34788IntAct:P34788InterPro:IPR001892
InterPro:IPR010979InterPro:IPR018269InterPro:IPR027437KEGG:ath:AT1G22780
KEGG:ath:AT1G34030KEGG:ath:AT4G09800KO:K02964OMA:RIMNTDL
PaxDb:P34788Pfam:P34788Pfam:PF00416Pfscan:PS50159
PhylomeDB:P34788PIR:S46223PIRSF:PIRSF002134PRIDE:P34788
PRO:PR:P34788PROSITE:PS00646PROSITE:PS50159ProteinModelPortal:P34788
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_173692.1RefSeq:NP_192718.1RefSeq:NP_564434.1
scanprosite:PS00646SMR:P34788STRING:3702.AT4G09800.1SUPFAM:SSF46946
TAIR:AT1G22780TAIR:AT1G34030TAIR:AT4G09800tair10-symbols:RPS18C
UniGene:At.179UniGene:At.180UniGene:At.20392UniGene:At.33672
UniProt:P34788UniProt:Q5PNZ9
Coordinates (TAIR10) chr4:+:6173818..6174963
Molecular Weight (calculated) 17546.50 Da
IEP (calculated) 11.23
GRAVY (calculated) -0.68
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)