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AT4G05420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : damaged DNA binding protein 1A
Curator
Summary (TAIR10)
Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.
Computational
Description (TAIR10)
damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 374; Plants - 231; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
Protein Annotations
BioGrid:11201BRENDA:6.3.2.19DIP:DIP-40455NeggNOG:ENOG410XPF6eggNOG:KOG1897EMBL:AK230366EMBL:AL161503
EMBL:AY074257EMBL:BT001905EMBL:CP002687EnsemblPlants:AT4G05420EnsemblPlants:AT4G05420.1entrez:825890ExpressionAtlas:Q9M0V3
Gene3D:2.130.10.10GeneID:825890Genevisible:Q9M0V3GO:GO:0003684GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0006289GO:GO:0009585GO:GO:0016567GO:GO:0043161GO:GO:0080008hmmpanther:PTHR10644HOGENOM:HOG000007241
InParanoid:Q9M0V3IntAct:Q9M0V3InterPro:IPR004871InterPro:IPR015943InterPro:IPR017986iPTMnet:Q9M0V3ncoils:Coil
OMA:QVIDVKFPaxDb:Q9M0V3Pfam:PF03178Pfam:PF10433Pfam:Q9M0V3PhylomeDB:Q9M0V3PIR:B85068
PRIDE:Q9M0V3PRO:PR:Q9M0V3ProteinModelPortal:Q9M0V3Proteomes:UP000006548Reactome:R-ATH-110314Reactome:R-ATH-5696394Reactome:R-ATH-5696395
Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_192451.1SMR:Q9M0V3STRING:3702.AT4G05420.1
SUPFAM:SSF50978TAIR:AT4G05420tair10-symbols:DDB1AUniGene:At.32663UniGene:At.47587UniPathway:UPA00143UniProt:Q9M0V3
Coordinates (TAIR10) chr4:+:2746288..2752663
Molecular Weight (calculated) 121313.00 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.10
Length 1088 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)