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AT4G04340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ERD (early-responsive to dehydration stress) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ERD (early-responsive to dehydration stress) family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G22120.6); Has 1468 Blast hits to 1288 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 185; Fungi - 720; Plants - 437; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5594eggNOG:KOG1134EMBL:KJ920356EnsemblPlants:AT4G04340EnsemblPlants:AT4G04340.1EnsemblPlants:AT4G04340.2EnsemblPlants:AT4G04340.3
entrez:825754ExpressionAtlas:A0A097NUN6GeneID:825754GO:GO:0016021GO:GO:0071474Gramene:AT4G04340.1Gramene:AT4G04340.2
Gramene:AT4G04340.3hmmpanther:PTHR13018hmmpanther:PTHR13018:SF47InterPro:IPR003864InterPro:IPR027815InterPro:IPR032880KEGG:ath:AT4G04340
ncoils:CoilOMA:RENVVNDPaxDb:A0A097NUN6Pfam:PF02714Pfam:PF13967Pfam:PF14703Pfam:Q9XEA1
PhylomeDB:A0A097NUN6RefSeq:NP_192343.1RefSeq:NP_849296.1RefSeq:NP_849297.1STRING:3702.AT4G04340.1TMHMM:TMhelixUniGene:At.22105
UniProt:A0A097NUN6UniProt:Q9XEA1
Coordinates (TAIR10) chr4:+:2123235..2126624
Molecular Weight (calculated) 87612.20 Da
IEP (calculated) 8.76
GRAVY (calculated) 0.18
Length 772 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLKDIGVS AGINILTAFI FFIIFAFLRL QPFNDRVYFS KWYLRGLRSS PASGGGFAGR FVNLELRSYL KFLHWMPEAL KMPERELIDH AGLDSVVYLR
101: IYWLGLKIFA PIAMLAWAVL VPVNWTNNEL ELAKHFKNVT SSDIDKLTIS NIPEGSNRFW AHIIMAYAFT IWTCYMLMKE YETVANMRLQ FLASEGRRPD
201: QFTVLVRNVP PDPDETVSEL VEHFFLVNHP DNYLTHQVVC NANKLADLVS KKTKLQNWLD YYQLKYTRNN SQIRPITKLG CLGLCGQKVD AIEHYIAEVD
301: KTSKEIAEER ENVVNDQKSV MPASFVSFKT RWAAAVCAQT TQTRNPTEWL TEWAAEPRDI YWPNLAIPYV SLTVRRLVMN VAFFFLTFFF IIPIAFVQSL
401: ATIEGIEKVA PFLKVIIEKD FIKSLIQGLL AGIALKLFLI FLPAILMTMS KFEGFTSVSF LERRSASRYY IFNLVNVFLG SVIAGAAFEQ LNSFLNQSPN
501: QIPKTIGMAI PMKATFFITY IMVDGWAGVA GEILMLKPLI IYHLKNAFLV KTEKDREEAM NPGSIGFNTG EPQIQLYFLL GLVYAPVTPM LLPFILVFFA
601: LAYVVYRHQI INVYNQEYES AAAFWPDVHG RVITALIISQ LLLMGLLGTK HAASAAPFLI ALPVITIGFH RFCKGRFEPA FVRYPLQEAM MKDTLERARE
701: PNLNLKGYLQ DAYIHPVFKG GDNDDDGDMI GKLENEVIIV PTKRQSRRNT PAPSRISGES SPSLAVINGK EV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)