AT3G63070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT2G48160.1); Has 1177 Blast hits to 1087 proteins in 165 species: Archae - 0; Bacteria - 37; Metazoa - 667; Fungi - 174; Plants - 161; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23302667..23309575 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 149326.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1347 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPSRKRGGG RAAAASSARR EWKVGDLVLA KVKGFPAWPA VVDEPEKWGH SADSKKVTVH FFGTQQIAFC NHGDVESFTE EKKQSLLTRR HAKGSDFVRA 0101: VKEITESYEK LKQQDQASGP KYAEETTAGS SGNTSQLPQA CENLIGSRLD TQIESSSSHG RDELTLLSED ASAAEQMLAL RHNTLAHNGA CDSAAAKDLC 0201: EIATYSSRRR NERVRALKYA PQSIILPVEH SKISSRLELD RVQRSMLQCS DGGPSVNSIN GKAIRRRKRI RTSGQSESDD VVSSDLNLHG SDEDNASEIA 0301: TVESNNNSRN EGNGVDSGSK VEYSDAVGEG CDGGHELNKG LDFHISTMVK RKKRKPTRKR ETSDIIDPPA KVEAEGLGPN ACDSCQRSQN SHERLNERPC 0401: EENGDEHLPL VKRARVRMSR AFYADEKVNA SSQVEERSSK DTLLSAALQT SPSVNHENGI GSGHDTSAAE EFNSFELSAK LSGVMVDVVP SHMEKPSDRM 0501: SPSVACVQTV GDRQTAVNFH ENEFTMTLDD EVTRAQSNQL SSLVETEARV PEVVQGCSEE SQTGNCLISE TDPIDIQCSH QSEKHETPLN PDIVDSSANK 0601: SPGLCSSLDM TTTVVPAQSP HQHKIQEYDS SDHSLVIVGD SLNGKCEKID YCMTQVVQSQ ALEPPPPLFC SVVNYQEVEN LQETENTLWK ENQGSPGKEL 0701: DSDKQAHMIQ NPVLSATESE MIVDDAEPQY ETVYSHCADA VENRELEKSC EVDEQKEQMQ ATNSISVSEN FSREKLNSSP ARGTPNCNSV CRISTAESEN 0801: AMQNNSYYST NVQYGENKSL NVDTVKEESK VETGTTQVKK VVSSDVQCTV ESFETALDSL VRTKETIGRA TRLAMDLAKF GVSAKAMEIL AHTLESESNL 0901: QRRVDLFFLV DSIAQCSKGL NGDAGGVYLS SIQAMLPRLL TAAVPAGATT QENRKQCLKV LRLWLERRIL PESIVRHHIR ELDSLSNVPA CLYSRRSART 1001: ERALDDPVRD MEGILVDEYG SNSTLQLHGF CIPPILRDED EGSDSDGGDF ESVTPEHESR SLEEHVTPSI TERHTRILED VDGELEMEDV APPWEGGSSA 1101: SAITDQADNR ESANCLLVPG TSHQNVTSSS PPARPSQNAQ LAMSNSYSNG FDYRRNPSMQ GDYHAGPPRM NPPMHYGSPE PSYSSRVSLS KSMPRGEGSN 1201: FQHRPYPSSH PPPPPPSHHY SYMEPDHHIK SRREGLSYPH RSHYTLEFDE RNYQDSYERM RPEPCENRDN WRYHPPSSHG PRYHDRHKGP HQSSSYSGHH 1301: RDSGRLQNNR WSDSPRAYNN RHSYHYKQHS EGPVPVGMRD PGTWHQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)