AT3G59980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 5867 Blast hits to 5867 proteins in 2108 species: Archae - 266; Bacteria - 4355; Metazoa - 277; Fungi - 157; Plants - 151; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22154528..22155570 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29746.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 273 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATIAVFTG GLKVKAGVLA VQISSLPLRR EFPRYLSSSS RRTVAAISSS LRVSAVYNHQ QRNRSSWPRV ATFCTAAPDA GTTVSADESE KKSESQKEEE 101: NVKETANLLD IKVGRIVKAW QHEEADSLYV EEVDIGEAEP RIICSGLVKY VPLDLLQGAS VVVLANLKPR NMRGVKSCGM LLAASDAAHE NVELLVPPEG 201: SVPGDRVWFG NEEDLEQLPE PAPPNKVQKK KMWELVQPLL KTDASGVSML KEHLMRTSSG LVTSKSLRNA NIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)