suba logo
AT3G53470.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35 Blast hits to 35 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0HDeggNOG:ENOG410XYTDEMBL:AK117746EMBL:AL132966EMBL:BT004728EMBL:CP002686EnsemblPlants:AT3G53470
EnsemblPlants:AT3G53470.1entrez:824515ExpressionAtlas:Q9LFH1GeneID:824515GO:GO:0016021Gramene:AT3G53470.1hmmpanther:PTHR36043
hmmpanther:PTHR36043:SF1HOGENOM:HOG000006076KEGG:ath:AT3G53470PhylomeDB:Q9LFH1PIR:T45887Proteomes:UP000006548RefSeq:NP_190915.1
STRING:3702.AT3G53470.2TAIR:AT3G53470TMHMM:TMhelixUniGene:At.66550UniProt:Q9LFH1
Coordinates (TAIR10) chr3:+:19822813..19823298
Molecular Weight (calculated) 15376.40 Da
IEP (calculated) 10.69
GRAVY (calculated) -0.52
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MDITVRISGL KSSNLIRITP RFSSSSRFRC SNNEPPRKGN ESNGGGGDKA STDWDKAWKN FKKQSKKSLF SQFNVDKYVT WNPPRSEFDL SEEVDPIKRT
101: ERSNLMLWTS PRFTLVGAIV IVSFLLLYTI LAPVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)