suba logo
AT3G52850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : golgi 10871276
AmiGO : golgi 10888666
AmiGO : golgi 9159954
AmiGO : plasma membrane 10561538
SwissProt : cytosol 16381842
SwissProt : golgi 16381842
SwissProt : vacuole 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 10561538
TAIR : golgi 10871276
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:16980567 (2006): plant-type vacuole
  • PMID:16617100 (2006): plant-type vacuole
  • PMID:15632053 (2005): Golgi
  • PMID:15141064 (2004): unclear
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar sorting receptor homolog 1
Curator
Summary (TAIR10)
Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.
Computational
Description (TAIR10)
vacuolar sorting receptor homolog 1 (VSR1); FUNCTIONS IN: amino-terminal vacuolar sorting propeptide binding; INVOLVED IN: Golgi to vacuole transport, vacuolar transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, Golgi apparatus, plasma membrane, integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF calcium-binding (InterPro:IPR013091), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 2 (TAIR:AT2G30290.2); Has 12319 Blast hits to 5607 proteins in 222 species: Archae - 0; Bacteria - 78; Metazoa - 11101; Fungi - 9; Plants - 529; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink).
Protein Annotations
BioGrid:9768eggNOG:ENOG410IFFKeggNOG:ENOG41105IFEMBL:AL132969EMBL:AY048289EMBL:CP002686EMBL:U79959
EMBL:U86700EMBL:Y07917EnsemblPlants:AT3G52850EnsemblPlants:AT3G52850.1entrez:824451GeneID:824451Genevisible:P93026
GO:GO:0000139GO:GO:0005509GO:GO:0005770GO:GO:0005783GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0006623GO:GO:0006896GO:GO:0007034GO:GO:0009940GO:GO:0016021GO:GO:0030665GO:GO:0031902
Gramene:AT3G52850.1hmmpanther:PTHR22765hmmpanther:PTHR22765:SF58HOGENOM:HOG000241019InParanoid:P93026IntAct:P93026InterPro:IPR001881
InterPro:IPR003137InterPro:IPR018097KEGG:ath:AT3G52850OMA:CWRESRGPaxDb:P93026PDB:4TJVPDB:4TJX
PDBsum:4TJVPDBsum:4TJXPfam:P93026Pfam:PF02225PhylomeDB:P93026PIR:T47542PRIDE:P93026
PRO:PR:P93026PROSITE:PS00010PROSITE:PS01186PROSITE:PS01187ProteinModelPortal:P93026Proteomes:UP000006548RefSeq:NP_190853.1
scanprosite:PS01187SMART:SM00179SMR:P93026STRING:3702.AT3G52850.1SUPFAM:SSF52025TAIR:AT3G52850tair10-symbols:ATELP
tair10-symbols:ATELP1tair10-symbols:ATVSR1tair10-symbols:BP-80tair10-symbols:BP80tair10-symbols:BP80-1;1tair10-symbols:BP80Btair10-symbols:GFS1
tair10-symbols:VSR1tair10-symbols:VSR1;1TMHMM:TMhelixUniGene:At.24701UniGene:At.60941UniProt:P93026
Coordinates (TAIR10) chr3:+:19587999..19591690
Molecular Weight (calculated) 68995.30 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.35
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)