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AT3G52180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dual specificity protein phosphatase (DsPTP1) family protein
Curator
Summary (TAIR10)
Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.
Computational
Description (TAIR10)
STARCH-EXCESS 4 (SEX4); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, polysaccharide binding; INVOLVED IN: protein amino acid dephosphorylation, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G10940.1); Has 675 Blast hits to 675 proteins in 103 species: Archae - 6; Bacteria - 6; Metazoa - 399; Fungi - 10; Plants - 178; Viruses - 3; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G52180-MONOMERBioCyc:MetaCyc:AT3G52180-MONOMERBioGrid:9701CAZy:CBM48EC:3.1.3.-eggNOG:COG2453eggNOG:KOG1616
eggNOG:KOG1716EMBL:AF439823EMBL:AJ302779EMBL:AJ302781EMBL:AL049711EMBL:AY084675EMBL:AY143878
EMBL:CP002686EnsemblPlants:AT3G52180EnsemblPlants:AT3G52180.1entrez:824383ExpressionAtlas:Q9FEB5Gene3D:3.90.190.10GeneID:824383
Genevisible:Q9FEB5GO:GO:0005982GO:GO:0005983GO:GO:0007623GO:GO:0008138GO:GO:0009507GO:GO:0009570
GO:GO:0019203GO:GO:0030247hmmpanther:PTHR10343hmmpanther:PTHR10343:SF58HOGENOM:HOG000005968InParanoid:Q9FEB5IntAct:Q9FEB5
InterPro:IPR000340InterPro:IPR000387InterPro:IPR014756InterPro:IPR020422InterPro:IPR029021InterPro:IPR030079InterPro:IPR032640
OMA:FCLQQDSPANTHER:PTHR10343:SF58PaxDb:Q9FEB5PDB:3NMEPDB:4PYHPDBsum:3NMEPDBsum:4PYH
Pfam:PF00782Pfam:PF16561Pfam:Q9FEB5Pfscan:PS50056PhylomeDB:Q9FEB5PIR:T49097PRIDE:Q9FEB5
PRO:PR:Q9FEB5PROSITE:PS50056ProteinModelPortal:Q9FEB5Proteomes:UP000006548RefSeq:NP_566960.1SMART:SM00195SMR:Q9FEB5
STRING:3702.AT3G52180.1SUPFAM:SSF52799SUPFAM:SSF81296TAIR:AT3G52180tair10-symbols:ATPTPKIS1tair10-symbols:ATSEX4tair10-symbols:DSP4
tair10-symbols:SEX4UniGene:At.24067UniProt:Q9FEB5
Coordinates (TAIR10) chr3:-:19349884..19353459
Molecular Weight (calculated) 42628.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.36
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)