suba logo
AT3G49680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : branched-chain aminotransferase 3
Curator
Summary (TAIR10)
Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.
Computational
Description (TAIR10)
branched-chain aminotransferase 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12479 Blast hits to 12479 proteins in 2523 species: Archae - 154; Bacteria - 7638; Metazoa - 266; Fungi - 416; Plants - 252; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G49680-MONOMERBioCyc:ARA:GQT-967-MONOMERBioCyc:MetaCyc:AT3G49680-MONOMEREC:2.6.1.42
EC:2.6.1.88eggNOG:COG0115eggNOG:KOG0975EMBL:AF446355
EMBL:AJ276124EMBL:AL132965EMBL:AY087619EMBL:AY097417
EMBL:CP002686EnsemblPlants:AT3G49680EnsemblPlants:AT3G49680.1entrez:824130
ExpressionAtlas:Q9M401GeneID:824130Genevisible:Q9M401GO:GO:0009097
GO:GO:0009098GO:GO:0009099GO:GO:0009507GO:GO:0009570
GO:GO:0052654GO:GO:0052655GO:GO:0052656gramene_pathway:2.6.1.-
gramene_pathway:2.6.1.42gramene_pathway:ILEUDEG-PWYgramene_pathway:ILEUSYN-PWYgramene_pathway:LEU-DEG2-PWY
gramene_pathway:LEUSYN-PWYgramene_pathway:PWY-1186gramene_pathway:PWY-3921gramene_pathway:PWYQT-4471
gramene_pathway:VALDEG-PWYgramene_pathway:VALSYN-PWYgramene_plant_reactome:1119460gramene_plant_reactome:1119540
gramene_plant_reactome:1119544gramene_plant_reactome:1119600gramene_plant_reactome:6875306gramene_plant_reactome:6876401
gramene_plant_reactome:6876642gramene_plant_reactome:6876935hmmpanther:PTHR11825hmmpanther:PTHR11825:SF46
HOGENOM:HOG000276704InParanoid:Q9M401InterPro:IPR001544InterPro:IPR005786
InterPro:IPR018300KEGG:00270+2.6.1.42KEGG:00280+2.6.1.42KEGG:00290+2.6.1.42
KEGG:00770+2.6.1.42KEGG:00966+2.6.1.42OMA:GSITHHGPANTHER:PTHR11825
PaxDb:Q9M401Pfam:PF01063Pfam:Q9M401PhylomeDB:Q9M401
PIR:T46034PIRSF:PIRSF006468PRIDE:Q9M401PRO:PR:Q9M401
PROSITE:PS00770ProteinModelPortal:Q9M401Proteomes:UP000006548Reactome:R-ATH-70895
RefSeq:NP_566923.1scanprosite:PS00770SMR:Q9M401STRING:3702.AT3G49680.1
SUPFAM:SSF56752TAIR:AT3G49680tair10-symbols:ATBCAT-3tair10-symbols:BCAT3
TIGRfam:TIGR01123TIGRFAMs:TIGR01123UniGene:At.25154UniPathway:UPA00047
UniPathway:UPA00048UniPathway:UPA00049UniProt:Q9M401
Coordinates (TAIR10) chr3:+:18422768..18425473
Molecular Weight (calculated) 44975.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.08
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MERAAILPSV NQNYLLCPSR AFSTRLHSST RNLSPPSFAS IKLQHSSSSV SSNGGISLTR CNAVSSNSSS TLVTELADID WDTVGFGLKP ADYMYVMKCN
101: IDGEFSKGEL QRFGNIEISP SAGVLNYGQG LFEGLKAYRK KDGNNILLFR PEENAKRMRN GAERMCMPAP TVEQFVEAVT ETVLANKRWV PPPGKGSLYV
201: RPLLMGTGAV LGLAPAPEYT FIIYVSPVGN YFKEGVAPIN LIVENEFHRA TPGGTGGVKT IGNYAAVLKA QSIAKAKGYS DVLYLDCIYK RYLEEVSSCN
301: IFIVKDNVIS TPEIKGTILP GITRKSMIDV ARTQGFQVEE RNVTVDELLE ADEVFCTGTA VVVSPVGSVT YKGKRVSYGE GTFGTVSKQL YTVLTSLQMG
401: LIEDNMKWTV NLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)