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AT3G42786.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
vacuole 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09130.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G42786EnsemblPlants:AT3G42786.1entrez:823315GeneID:823315Gramene:AT3G42786.1KEGG:ath:AT3G42786
PaxDb:Q3E7G4PhylomeDB:Q3E7G4PRIDE:Q3E7G4Proteomes:UP000006548RefSeq:NP_683652.1STRING:3702.AT3G42786.1TAIR:AT3G42786
UniGene:At.65223UniProt:Q3E7G4
Coordinates (TAIR10) chr3:+:14876476..14877255
Molecular Weight (calculated) 29904.30 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.31
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPLQGYSLI TSLYQYNFQS EEVFMAMEER VWTGCDQLSR WWKEDLNALR DAMWFNAGHP VKISFKKETA CSNTVKQLLV KSGLGSAAAM LPYLEPEVRK
101: AKTYISHLET VSPMINKVGG GRYKWETLFE MMAYLENFPI WMSKEIVTVN NAPTHLRSLD TREKVVASIK EYCMRNACNI ALYFGFYMVM VEKGDQFDGA
201: KNLKKVYSLM ALKKSHFGCY LTGTELFLDY CAYKAKQSDT TGVSRRMRMR DKAEEETCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)