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AT3G27160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S21 family protein
Curator
Summary (TAIR10)
GHS1 encodes plastid ribosomal protein S21
Computational
Description (TAIR10)
GLUCOSE HYPERSENSITIVE 1 (GHS1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT5G63300.1); Has 1937 Blast hits to 1937 proteins in 824 species: Archae - 0; Bacteria - 1717; Metazoa - 0; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYN5eggNOG:ENOG410Y838EMBL:AP001312EMBL:CP002686EnsemblPlants:AT3G27160EnsemblPlants:AT3G27160.1entrez:822335
GeneID:822335GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0009534GO:GO:0009570GO:GO:0044391
Gramene:AT3G27160.1HAMAP:MF_00358hmmpanther:PTHR21109hmmpanther:PTHR21109:SF0InterPro:IPR001911KEGG:ath:AT3G27160OMA:RRPQARF
Pfam:PF01165PhylomeDB:Q9LI88PRINTS:PR00976ProDom:PD005521Proteomes:UP000006548RefSeq:NP_566809.1SMR:Q9LI88
STRING:3702.AT3G27160.1TAIR:AT3G27160tair10-symbols:GHS1TIGRfam:TIGR00030TIGRFAMs:TIGR00030UniGene:At.25259UniProt:Q9LI88
Coordinates (TAIR10) chr3:+:10017531..10018854
Molecular Weight (calculated) 20912.50 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.93
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASFSLTSF ISFISPFKSQ TKPTPPPNLT LPSPTISQRR RNDLAIESMA VEETSSTASS LSSELASVIC PSLAYSNTLF FSSGYNVQVF VEDNESEERL
101: VNRFRREVMR TGVIQECKRR RYFENKQDEK KRRTRDAAKR NKKRRPQARF TQETREEAAA ATKSKKKDEE EDNWEMPGGD VPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)