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AT3G25860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22318864 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoacid dehydrogenases acyltransferase family protein
Curator
Summary (TAIR10)
Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.
Computational
Description (TAIR10)
LTA2; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity; INVOLVED IN: metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: cytosolic ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenases acyltransferase family protein (TAIR:AT1G34430.1); Has 23844 Blast hits to 20819 proteins in 2344 species: Archae - 101; Bacteria - 13163; Metazoa - 1146; Fungi - 799; Plants - 467; Viruses - 32; Other Eukaryotes - 8136 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G25860-MONOMERBioGrid:7512EC:2.3.1.12eggNOG:COG0508eggNOG:KOG0557EMBL:AB023041EMBL:AF066079
EMBL:AY037262EMBL:BT002343EMBL:CP002686EnsemblPlants:AT3G25860EnsemblPlants:AT3G25860.1entrez:822181Gene3D:3.30.559.10
Gene3D:4.10.320.10GeneID:822181Genevisible:Q9SQI8GO:GO:0004742GO:GO:0006086GO:GO:0006096GO:GO:0009507
GO:GO:0009534GO:GO:0009570GO:GO:0009941GO:GO:0016020GO:GO:0022626Gramene:AT3G25860.1gramene_pathway:2.3.1.12
gramene_pathway:PYRUVDEHYD-PWYhmmpanther:PTHR23151hmmpanther:PTHR23151:SF61HOGENOM:HOG000281566InParanoid:Q9SQI8IntAct:Q9SQI8InterPro:IPR000089
InterPro:IPR001078InterPro:IPR003016InterPro:IPR004167InterPro:IPR011053InterPro:IPR023213iPTMnet:Q9SQI8KEGG:ath:AT3G25860
KO:K00627ncoils:CoilOMA:FTALINDPaxDb:Q9SQI8Pfam:PF00198Pfam:PF00364Pfam:PF02817
Pfam:Q9SQI8Pfscan:PS50968PhylomeDB:Q9SQI8PRIDE:Q9SQI8PRO:PR:Q9SQI8PROSITE:PS00189PROSITE:PS50968
ProteinModelPortal:Q9SQI8Proteomes:UP000006548RefSeq:NP_189215.1scanprosite:PS00189SMR:Q9SQI8STRING:3702.AT3G25860.1SUPFAM:SSF47005
SUPFAM:SSF51230SUPFAM:SSF52777SwissPalm:Q9SQI8TAIR:AT3G25860tair10-symbols:LTA2tair10-symbols:PLE2UniGene:At.23227
UniProt:Q9SQI8
Coordinates (TAIR10) chr3:+:9460632..9462585
Molecular Weight (calculated) 50083.00 Da
IEP (calculated) 8.80
GRAVY (calculated) 0.04
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)