suba logo
AT3G24500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : multiprotein bridging factor 1C
Curator
Summary (TAIR10)
One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.
Computational
Description (TAIR10)
multiprotein bridging factor 1C (MBF1C); CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: multiprotein bridging factor 1B (TAIR:AT3G58680.1); Has 715 Blast hits to 715 proteins in 278 species: Archae - 65; Bacteria - 30; Metazoa - 196; Fungi - 149; Plants - 136; Viruses - 2; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
BioGrid:7372eggNOG:COG1813eggNOG:KOG3398EMBL:AB020746EMBL:AK227957EMBL:AY085593EMBL:BT004761
EMBL:CP002686EnsemblPlants:AT3G24500EnsemblPlants:AT3G24500.1entrez:822041ExpressionAtlas:Q9LV58Gene3D:1.10.260.40GeneID:822041
Genevisible:Q9LV58GO:GO:0003700GO:GO:0003713GO:GO:0005730GO:GO:0005737GO:GO:0006351GO:GO:0009408
GO:GO:0009414GO:GO:0009737GO:GO:0009873GO:GO:0043565GO:GO:0045893hmmpanther:PTHR10245hmmpanther:PTHR10245:SF33
HOGENOM:HOG000195726InterPro:IPR001387InterPro:IPR010982InterPro:IPR013729ncoils:CoilOMA:SKQKSQDPaxDb:Q9LV58
Pfam:PF01381Pfam:PF08523Pfam:Q9LV58Pfscan:PS50943PhylomeDB:Q9LV58PRIDE:Q9LV58PRO:PR:Q9LV58
PROSITE:PS50943ProteinModelPortal:Q9LV58Proteomes:UP000006548RefSeq:NP_189093.1SMART:SM00530SMR:Q9LV58STRING:3702.AT3G24500.1
SUPFAM:SSF47413TAIR:AT3G24500tair10-symbols:ATMBF1Ctair10-symbols:MBF1CUniGene:At.37513UniProt:Q9LV58
Coordinates (TAIR10) chr3:+:8918755..8919201
Molecular Weight (calculated) 16404.10 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.69
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)