suba logo
AT3G23940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dehydratase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dehydratase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: pollen development; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581); Has 13943 Blast hits to 13934 proteins in 2322 species: Archae - 210; Bacteria - 7441; Metazoa - 5; Fungi - 304; Plants - 157; Viruses - 0; Other Eukaryotes - 5826 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G23940-MONOMERBioCyc:ARA:GQT-1269-MONOMEREC:4.2.1.9eggNOG:COG0129eggNOG:KOG2448EMBL:AF446360EMBL:AP001297
EMBL:AY039921EMBL:BT000972EMBL:CP002686EnsemblPlants:AT3G23940EnsemblPlants:AT3G23940.1EnsemblPlants:AT3G23940.2entrez:821977
ExpressionAtlas:Q9LIR4GeneID:821977Genevisible:Q9LIR4GO:GO:0004160GO:GO:0005507GO:GO:0009082GO:GO:0009097
GO:GO:0009099GO:GO:0009507GO:GO:0009536GO:GO:0009553GO:GO:0009555GO:GO:0009570GO:GO:0009651
GO:GO:0016836GO:GO:0048364GO:GO:0051539gramene_pathway:4.2.1.9gramene_pathway:ILEUSYN-PWYgramene_pathway:VALSYN-PWYgramene_plant_reactome:1119460
gramene_plant_reactome:1119600gramene_plant_reactome:6875324gramene_plant_reactome:6876597HAMAP:MF_00012hmmpanther:PTHR21000hmmpanther:PTHR21000:SF5HOGENOM:HOG000173155
InParanoid:Q9LIR4IntAct:Q9LIR4InterPro:IPR000581InterPro:IPR004404InterPro:IPR015928InterPro:IPR020558KEGG:00290+4.2.1.9
KEGG:00770+4.2.1.9KEGG:ath:AT3G23940KO:K01687OMA:GYEGNPCPANTHER:PTHR21000PaxDb:Q9LIR4Pfam:PF00920
Pfam:Q9LIR4PhylomeDB:Q9LIR4PRIDE:Q9LIR4PRO:PR:Q9LIR4PROSITE:PS00886PROSITE:PS00887ProteinModelPortal:Q9LIR4
Proteomes:UP000006548RefSeq:NP_001189959.1RefSeq:NP_189036.1scanprosite:PS00886scanprosite:PS00887SMR:Q9LIR4STRING:3702.AT3G23940.1
SUPFAM:0052935SUPFAM:SSF52016SwissPalm:Q9LIR4TAIR:AT3G23940TIGRfam:TIGR00110TIGRFAMs:TIGR00110UniGene:At.8280
UniPathway:UPA00047UniPathway:UPA00049UniProt:Q9LIR4
Coordinates (TAIR10) chr3:+:8648780..8652323
Molecular Weight (calculated) 64917.50 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.10
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)