AT3G23640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : heteroglycan glucosidase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT5G63840.1); Has 5349 Blast hits to 5021 proteins in 1110 species: Archae - 88; Bacteria - 3100; Metazoa - 761; Fungi - 803; Plants - 278; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:8502355..8509358 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110885.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLSGDSSET VEMTSTDMIF EPILEHGVFR FDCSVDHRKA AFPSVSFKNS KDREVPIVSH IVPAYIPTCG CLQDQQVVTF EFSPGTSFYG TGEVSGQLER 101: TGKRVFTWNT DAWGYGSGTT SLYQSHPWVL VVLPTGETLG VLADTTRKCE IDLRKEGIIR IISPASYPII TFGPFSSPTA VLESLSHAIG TVFMPPKWAL 201: GYHQCRWSYM SDKRVAEIAQ TFRDKKIPSD VIWMDIDYMD GFRCFTFDKE RFPDPSALAK DLHSNGFKAI WMLDPGIKQE EGYYVYDSGS KNDVWISRAD 301: GKPFTGEVWP GPCVFPDYTN SKARSWWANL VKEFVSNGVD GIWNDMNEPA VFKVVTKTMP ENNIHHGDDE LGGVQNHSHY HNVYGMLMAR STYEGMELAD 401: KNKRPFVLTR AGFIGSQRYA ATWTGDNLSN WEHLHMSISM VLQLGLSGQP LSGPDIGGFA GNATPRLFGR WMGVGAMFPF CRGHSEAGTD DHEPWSFGEE 501: CEEVCRAALK RRYQLLPHFY TLFYIAHTTG APVAAPIFFA DPIDSRLRAV ENGFLLGPLL IYASTLSSQG SHELQHILPR GIWHRFDFAD SHPDLPTLYL 601: QGGSIISLAP PHLHVGEFSL SDDLTLLVSL DENGKAKGLL FEDDGDGYGY TKGRFLVTHY IAERDSSTVT VKVSKTEGDW QRPNRRVHVQ LLLGGGAMLD 701: AWGMDGEFIH IKVPSESGIS ELISTSNERF KLHMENTKLI PEKEVVPGQK GMELSKEPVE LSSGDWKLNI VPWVGGRILS MTHVPSGIQW LHSRIDINGY 801: EEYSGTEYRS AGCTEEYNVI ERDLEHAGEE ESLILEGDVG GGLVLRRKIS IAKDNQRVFR IASSIEARSV GAGSGGFSRL VCLRVHPTFT LLHPTESFVS 901: FTSIDGSKHE VWPDSGDQIY EGNNLPHGKW MLVDKSLNLR MVNRFDVSQV FKCIIHWDCG TVNLELWSKE RPVSKESPLK IEHEYEVTSF P |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)