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AT3G23080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.619
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14500.1); Has 367 Blast hits to 366 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HC0eggNOG:KOG2761EMBL:AB026655EMBL:AY150505EMBL:CP002686EnsemblPlants:AT3G23080EnsemblPlants:AT3G23080.1
entrez:821882ExpressionAtlas:Q9LS84Gene3D:3.30.530.20GeneID:821882GO:GO:0008289GO:GO:0016021Gramene:AT3G23080.1
hmmpanther:PTHR19308hmmpanther:PTHR19308:SF9InterPro:IPR002913InterPro:IPR023393OMA:DWKWIVVPfam:PF01852Pfscan:PS50848
PhylomeDB:Q9LS84PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_566722.1SMR:Q9LS84STRING:3702.AT3G23080.1SUPFAM:SSF55961
TAIR:AT3G23080TMHMM:TMhelixUniGene:At.6125UniGene:At.71222UniProt:Q9LS84
Coordinates (TAIR10) chr3:-:8207612..8209181
Molecular Weight (calculated) 47611.10 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.30
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIFMDFFNK PSVTETFVDV LLCAVPIWVT VMIGLLIGWS WRPRWTSLVY LGFRSKLRFL CTVPPGFGAR RIWLAFTALS AFSVCSTSNK SSVNNGSSKP
101: VEEEAFSRAS DKVTEKEKDV VTEKDLEHLL HLLEAGNASF EWQSMMDKST PNMSYQAWRH EPEIGPVVYR SRTVFEDVTP DIVRDFFWDD EFRPKWDTML
201: AYFKTLEEDP KTGTTIVHWI KKFPFFCSDR EYIIGRRIWE SGRKYYAVTK GVPYKALSKR DKPRRVELYF SSWIINAVES RKGDGQMTAC EVSLVHYEDM
301: GIPKDVAKLG VRHGMWGAVK KLNSGLRAYQ SARKPGTSLS RSAQMASITT KLNMDLVETS GAEDEERGRA VENARKQNDQ FGVDWKWIVV GGVALACGLH
401: SSAIGKALMV GAGQRLARR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)