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AT3G20670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone H2A 13
Curator
Summary (TAIR10)
Encodes HTA13, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 13 (HTA13); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 10 (TAIR:AT1G51060.1); Has 3900 Blast hits to 3895 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 2556; Fungi - 297; Plants - 612; Viruses - 4; Other Eukaryotes - 431 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5262eggNOG:KOG1756EMBL:AP002034EMBL:AY045967
EMBL:AY079320EMBL:AY085312EMBL:CP002686EnsemblPlants:AT3G20670
EnsemblPlants:AT3G20670.1entrez:821614Gene3D:1.10.20.10GeneID:821614
Genevisible:Q9LHQ5GO:GO:0000786GO:GO:0000790GO:GO:0003677
GO:GO:0006342Gramene:AT3G20670.1hmmpanther:PTHR23430HOGENOM:HOG000234652
InParanoid:Q9LHQ5InterPro:IPR002119InterPro:IPR007125InterPro:IPR009072
InterPro:IPR032454InterPro:IPR032458KEGG:ath:AT3G20670KO:K11251
OMA:RISPRHMPaxDb:Q9LHQ5Pfam:PF00125Pfam:PF16211
Pfam:Q9LHQ5PhylomeDB:Q9LHQ5PRIDE:Q9LHQ5PRINTS:PR00620
PRO:PR:Q9LHQ5PROSITE:PS00046ProteinModelPortal:Q9LHQ5Proteomes:UP000006548
RefSeq:NP_188703.1scanprosite:PS00046SMART:SM00414SMR:Q9LHQ5
STRING:3702.AT3G20670.1SUPFAM:SSF47113TAIR:AT3G20670tair10-symbols:HTA13
UniGene:At.17184UniGene:At.6771UniGene:At.73912UniProt:Q9LHQ5
Coordinates (TAIR10) chr3:+:7229472..7229963
Molecular Weight (calculated) 13849.90 Da
IEP (calculated) 10.84
GRAVY (calculated) -0.19
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRGKTLGS GVAKKSTSRS SKAGLQFPVG RIARFLKNGK YATRVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHSLLLPK KAGASKPSAD ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)