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AT3G16240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Predictors External Curations
AmiGO : vacuole 17905861
AmiGO : vacuole 8624437
SwissProt : vacuole 16381842
TAIR : plastid 15028209
TAIR : vacuole 15539469
TAIR : plastid 12766230
TAIR : plasma membrane 15060130
TAIR : vacuole 8624437
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19922653 (2009): plant-type vacuole
  • PMID:17999643 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17981987 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17337534 (2007): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16236160 (2005): plant-type vacuole
  • PMID:15141064 (2004): cytosol
  • PMID:15141064 (2004): plant-type vacuole
  • PMID:14988481 (2004): plant-type vacuole
  • PMID:14576283 (2003): endoplasmic reticulum
  • PMID:14576283 (2003): plant-type vacuole
  • PMID:10737809 (2000): plant-type vacuole
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16287169 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : delta tonoplast integral protein
Curator
Summary (TAIR10)
Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
Computational
Description (TAIR10)
delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
Protein Annotations
BioGrid:6204eggNOG:COG0580eggNOG:KOG0223EMBL:AB023046
EMBL:AK229954EMBL:AY065181EMBL:AY081622EMBL:AY085921
EMBL:CP002686EMBL:U39485EMBL:U39486EMBL:Z18064
EMBL:Z29043EMBL:Z29044EnsemblPlants:AT3G16240EnsemblPlants:AT3G16240.1
entrez:820870Gene3D:1.20.1080.10GeneID:820870Genevisible:Q41951
GO:GO:0000326GO:GO:0005618GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0005886GO:GO:0006833GO:GO:0009505
GO:GO:0009506GO:GO:0009507GO:GO:0009705GO:GO:0009941
GO:GO:0015200GO:GO:0015250GO:GO:0015254GO:GO:0015793
GO:GO:0016021GO:GO:0042807GO:GO:0072489Gramene:AT3G16240.1
hmmpanther:PTHR19139hmmpanther:PTHR19139:SF99HOGENOM:HOG000288286InParanoid:Q41951
IntAct:Q41951InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271
KEGG:ath:AT3G16240KO:K09873OMA:FMGSSEHPANTHER:PTHR19139
PaxDb:Q41951Pfam:PF00230Pfam:Q41951PhylomeDB:Q41951
PRIDE:Q41951PRINTS:PR00783PRO:PR:Q41951PROSITE:PS00221
ProteinModelPortal:Q41951Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673
Reactome:R-ATH-432040Reactome:R-ATH-432047RefSeq:NP_188245.1scanprosite:PS00221
SMR:Q41951STRING:3702.AT3G16240.1SUPFAM:SSF81338TAIR:AT3G16240
tair10-symbols:AQP1tair10-symbols:ATTIP2;1tair10-symbols:DELTA-TIPtair10-symbols:DELTA-TIP1
tair10-symbols:TIP2;1TCDB:1.A.8.10.10TIGRfam:TIGR00861TIGRFAMs:TIGR00861
TMHMM:TMhelixUniGene:At.23571UniGene:At.32719UniGene:At.6081
UniGene:At.71329UniProt:Q41951
Coordinates (TAIR10) chr3:+:5505534..5506788
Molecular Weight (calculated) 25028.50 Da
IEP (calculated) 5.43
GRAVY (calculated) 0.97
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)