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AT3G15420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcription factor TFIIIC, tau55-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT1G80745.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1TFeggNOG:ENOG410ZAWWEMBL:AB022218EMBL:AC024081
EMBL:AK175945EMBL:BT010503EMBL:CP002686EnsemblPlants:AT3G15420
EnsemblPlants:AT3G15420.1entrez:820781GeneID:820781Gramene:AT3G15420.1
hmmpanther:PTHR21860hmmpanther:PTHR21860:SF2HOGENOM:HOG000077665IntAct:Q9LDR3
InterPro:IPR019481KEGG:ath:AT3G15420KO:K15203OMA:MEADLMH
Pfam:PF10419PhylomeDB:Q9LDR3Proteomes:UP000006548RefSeq:NP_188161.1
STRING:3702.AT3G15420.1TAIR:AT3G15420UniGene:At.39047UniProt:Q9LDR3
Coordinates (TAIR10) chr3:-:5207704..5208289
Molecular Weight (calculated) 11970.30 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.26
Length 107 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)