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AT3G15190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast 30S ribosomal protein S20, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chloroplast 30S ribosomal protein S20, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S20 (InterPro:IPR002583); Has 3989 Blast hits to 3989 proteins in 1480 species: Archae - 0; Bacteria - 3264; Metazoa - 2; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 674 (source: NCBI BLink).
Protein Annotations
BioGrid:6084eggNOG:ENOG410IY4CeggNOG:ENOG41129UTEMBL:AF361807EMBL:AF370555EMBL:AP001299EMBL:AY055105
EMBL:AY072522EMBL:AY086352EMBL:CP002686EnsemblPlants:AT3G15190EnsemblPlants:AT3G15190.1entrez:820750Gene3D:1.20.58.110
GeneID:820750Genevisible:Q9ASV6GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0016020GO:GO:0019843Gramene:AT3G15190.1HAMAP:MF_00500hmmpanther:PTHR33398hmmpanther:PTHR33398:SF2
HOGENOM:HOG000005766InParanoid:Q9ASV6InterPro:IPR002583KEGG:ath:AT3G15190KO:K02968ncoils:CoilOMA:RRVYNKA
PaxDb:Q9ASV6Pfam:PF01649Pfam:Q9ASV6PhylomeDB:Q9ASV6PRIDE:Q9ASV6PRO:PR:Q9ASV6ProDom:PD004231
ProteinModelPortal:Q9ASV6Proteomes:UP000006548RefSeq:NP_188137.1SMR:Q9ASV6STRING:3702.AT3G15190.1SUPFAM:SSF46992TAIR:AT3G15190
TIGRfam:TIGR00029TIGRFAMs:TIGR00029UniGene:At.21189UniProt:Q9ASV6
Coordinates (TAIR10) chr3:+:5116216..5117412
Molecular Weight (calculated) 21827.40 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.34
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIVQCLSS CATLESQFKV LSLKGISCSS PSSSFSNRRG ASATLSSSLS FSQSVSQCVA FSTGNLWVQK PMRQLIVCEA AAPTKKADSA AKRARQAEKR
101: RVYNKSKKSE ARTRMKKVLE ALEGLKKKTD AQADEIVTVE KLIGEAYSAI DKAVKVKALH KNTGARRKSR LARRKKAVEI HHGWYVPDAA AAAPSEAVPM
201: AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)