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AT3G14740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At3g14740
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3447 Blast hits to 3310 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1911; Fungi - 561; Plants - 635; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5141eggNOG:KOG0955EMBL:AY088892EMBL:CP002686
EnsemblPlants:AT3G14740EnsemblPlants:AT3G14740.1entrez:820702ExpressionAtlas:Q8L8P1
Gene3D:3.30.40.10GeneID:820702GO:GO:0008270Gramene:AT3G14740.1
hmmpanther:PTHR13793HOGENOM:HOG000090334InterPro:IPR001965InterPro:IPR011011
InterPro:IPR013083InterPro:IPR019787KEGG:ath:AT3G14740KO:K11380
Pfam:PF00628Pfam:PF13832Pfscan:PS50016PhylomeDB:Q8L8P1
PROSITE:PS50016Proteomes:UP000006548Reactome:R-ATH-114608Reactome:R-ATH-3214847
RefSeq:NP_566491.1SMART:SM00249SMR:Q8L8P1STRING:3702.AT3G14740.2
SUPFAM:SSF57903TAIR:AT3G14740UniGene:At.39180UniProt:Q8L8P1
Coordinates (TAIR10) chr3:-:4952185..4953306
Molecular Weight (calculated) 38741.10 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.65
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAQYQDLPP LKRLRLLQRD LEAAQQHQLP NQPEMKSLQL PAKKRKQTRV DYDDDDAENS NPTYHCLPAK KRIWAIDPDL LSGGGNPFSP FDLNVEYKPY
101: VEEKSIEKKS TLNVESSLEV EEDDDKENID PLGKGKALDL SDREVEDEDG IMCAVCQSTD GDPLNPIVFC DGCDLMVHAS CYGNPLVKAI PEGDWFCRQC
201: LSSKNREKIF SCCLCTTKGG AMKPTNDGRW AHITCALFVP EVYFEDPEGR EGICCSEVLS KRWKDRCYLC KVRRGCVIEC SEMRCKLAFH VTCGLKEDLC
301: IEYREGKKSG GIVVGFCNEH TKLWERESGK YKIVAREEDK K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)