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AT3G09880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2A regulatory B subunit family protein
Curator
Summary (TAIR10)
Encodes B' regulatory subunit of PP2A (AtB'beta).
Computational
Description (TAIR10)
ATB' BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT5G03470.1); Has 1186 Blast hits to 1156 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 571; Fungi - 167; Plants - 302; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Protein Annotations
BioGrid:5480eggNOG:ENOG410XQJWeggNOG:KOG2085EMBL:AC015985
EMBL:AY072226EMBL:AY113852EMBL:CP002686EMBL:U73527
EnsemblPlants:AT3G09880EnsemblPlants:AT3G09880.1entrez:820146GeneID:820146
Genevisible:O04376GO:GO:0000159GO:GO:0007165GO:GO:0008601
Gramene:AT3G09880.1hmmpanther:PTHR10257hmmpanther:PTHR10257:SF20HOGENOM:HOG000067326
InterPro:IPR002554InterPro:IPR016024KEGG:ath:AT3G09880KO:K11584
ncoils:CoilOMA:AISVNIFPANTHER:PTHR10257PaxDb:O04376
Pfam:O04376Pfam:PF01603PhylomeDB:O04376PIRSF:PIRSF028043
PRIDE:O04376PRO:PR:O04376ProteinModelPortal:O04376Proteomes:UP000006548
Reactome:R-ATH-198753Reactome:R-ATH-202670RefSeq:NP_187599.1SMR:O04376
STRING:3702.AT3G09880.1SUPFAM:SSF48371TAIR:AT3G09880tair10-symbols:ATB' BETA
UniGene:At.44943UniProt:O04376
Coordinates (TAIR10) chr3:+:3029902..3031931
Molecular Weight (calculated) 57475.20 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.38
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)