AT3G09100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mRNA capping enzyme family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT5G01290.1); Has 815 Blast hits to 810 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 317; Fungi - 230; Plants - 80; Viruses - 64; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2790038..2792913 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54579.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVATMDLNAS PQPEEDDEPY VRHLEDYSSR DERIESAVEI ARREREERKK RMRYDKPTHN SQPVFRDQYY QNRNTKAYDR YKIPQGWLDC PPSGNEIGFL 101: VPSKVPLNES YNNHVPPGSR YSFKQVIHNQ RIAGRKLGLV IDLTNTTRYY STTDLKKEGI KHVKIACKGR DAVPDNVSVN AFVNEVNQFV LNLKHSKKYI 201: LVHCTHGHNR TGFMIVHYLM RSGPMNVTQA LKIFSDARPP GIYKPDYIDA LYSFYHEIKP ESVICPSTPE WKRSTELDLN GEALPDDEDD DGGPAGPVQG 301: FQEESHQVDV KMSNDDVLGD EIPPDQEEGY RQFFYRMLSL NIGGRGCSQF PGSHPVSLNR ENLQLLRQRY YYATWKADGT RYMMLLTTDG CYIVDRSFRF 401: RRVQMRFPFR HPTEGISDKV HHFTLLDGEM IIDTLPDKQK QERRYLIYDM VAINGQSVVE VGIVIIYLCN Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)