AT3G04750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 37204 Blast hits to 13541 proteins in 229 species: Archae - 0; Bacteria - 9; Metazoa - 47; Fungi - 88; Plants - 36631; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1301391..1303376 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74771.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 661 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCFVLLLRRG FRLFGTECGS KTTKWDPVQS LQLNHQSLVL LENCNSRNQF KQVLAQIMRF NLICDTFPMS RLIFFSAITY PENLDLAKLL FLNFTPNPNV 101: FVYNTMISAV SSSKNECFGL YSSMIRHRVS PDRQTFLYLM KASSFLSEVK QIHCHIIVSG CLSLGNYLWN SLVKFYMELG NFGVAEKVFA RMPHPDVSSF 201: NVMIVGYAKQ GFSLEALKLY FKMVSDGIEP DEYTVLSLLV CCGHLSDIRL GKGVHGWIER RGPVYSSNLI LSNALLDMYF KCKESGLAKR AFDAMKKKDM 301: RSWNTMVVGF VRLGDMEAAQ AVFDQMPKRD LVSWNSLLFG YSKKGCDQRT VRELFYEMTI VEKVKPDRVT MVSLISGAAN NGELSHGRWV HGLVIRLQLK 401: GDAFLSSALI DMYCKCGIIE RAFMVFKTAT EKDVALWTSM ITGLAFHGNG QQALQLFGRM QEEGVTPNNV TLLAVLTACS HSGLVEEGLH VFNHMKDKFG 501: FDPETEHYGS LVDLLCRAGR VEEAKDIVQK KMPMRPSQSM WGSILSACRG GEDIETAELA LTELLKLEPE KEGGYVLLSN IYATVGRWGY SDKTREAMEN 601: RGVKKTAGYS SVVGVEGLHR FVAAEKQNHP RWTEIKRILQ HLYNEMKPKL DCLDLLEIEI K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)