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AT3G02770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT5G16450.2); Has 3340 Blast hits to 3340 proteins in 1050 species: Archae - 84; Bacteria - 2632; Metazoa - 2; Fungi - 51; Plants - 104; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).
Protein Annotations
EC:4.1.1.3EC:4.1.3.17eggNOG:COG0684eggNOG:ENOG410IGW2
EMBL:AC018363EMBL:AY086886EMBL:CP002686EnsemblPlants:AT3G02770
EnsemblPlants:AT3G02770.1entrez:820949ExpressionAtlas:Q9M8R9Gene3D:3.50.30.40
GeneID:820949Genevisible:Q9M8R9GO:GO:0008428GO:GO:0008948
GO:GO:0046872GO:GO:0047443GO:GO:0051252Gramene:AT3G02770.1
hmmpanther:PTHR33254hmmpanther:PTHR33254:SF4HOGENOM:HOG000252803InParanoid:Q9M8R9
IntAct:Q9M8R9InterPro:IPR005493InterPro:IPR010203KEGG:ath:AT3G02770
OMA:GCVRDVGPaxDb:Q9M8R9Pfam:PF03737Pfam:Q9M8R9
PhylomeDB:Q9M8R9PRIDE:Q9M8R9PRO:PR:Q9M8R9ProteinModelPortal:Q9M8R9
Proteomes:UP000006548RefSeq:NP_186926.1SMR:Q9M8R9STRING:3702.AT3G02770.1
SUPFAM:SSF89562TAIR:AT3G02770TIGRfam:TIGR01935TIGRFAMs:TIGR01935
UniGene:At.41079UniProt:Q67Y35UniProt:Q9M8R9
Coordinates (TAIR10) chr3:-:601017..601884
Molecular Weight (calculated) 17837.50 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.08
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFVTTAEVC DANQEMIRSG QLRALQPVFQ IYGRRQIFSG PVVTVKVFED NGLIRHFLEE KGNGRVLVVD GGGSLRCAIL GGNPVVQAQN NGWAGIIVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVSLNIA GTRICDGEWL YADTDGILVS QIELSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)