suba logo
AT3G02500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVP1eggNOG:ENOG41105R5EMBL:CP002686EnsemblPlants:AT3G02500EnsemblPlants:AT3G02500.1entrez:821065GeneID:821065
Gramene:AT3G02500.1hmmpanther:PTHR36748InParanoid:F4JBZ8KEGG:ath:AT3G02500ncoils:CoilOMA:ELNSKWNPaxDb:F4JBZ8
PRIDE:F4JBZ8Proteomes:UP000006548RefSeq:NP_186899.5STRING:3702.AT3G02500.1TAIR:AT3G02500UniGene:At.20016UniGene:At.41128
UniProt:F4JBZ8
Coordinates (TAIR10) chr3:+:519364..521628
Molecular Weight (calculated) 33497.10 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.77
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLRGEELEF NLREWARQGH LTREDQSSRR FSASCIRSFR EDHKSCTTNV TISSTASSPG YSLKDEIDPS NYSFSSALKA LQAKSVYKKN WDWLKPEGVE
101: LNSKWNEAEK YICNPLSGEV PLECLSSKTL NSRSFRNLST KHAPLMILPS NYNLNIPRTV NPKVRIIHED PRSPDPVLIQ DKKVVGSKRD VVSAQGNVSA
201: AKTTPIMERL TKRQVGADDS PVEYALKLKA QQEDVKLEEN EQNMMTKEIQ EEKKEKKKRR GSGFSSWIRK MQRQPRKSKC IFLICLPHLI KAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)