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AT3G02260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:30875866 (2019): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : auxin transport protein (BIG)
Curator
Summary (TAIR10)
Calossin-like protein required for polar auxin transport
Computational
Description (TAIR10)
BIG (BIG); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: response to auxin stimulus, indeterminate inflorescence morphogenesis, photomorphogenesis, root development, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Armadillo-type fold (InterPro:IPR016024), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, N-recognin (InterPro:IPR003126); Has 1182 Blast hits to 997 proteins in 123 species: Archae - 0; Bacteria - 4; Metazoa - 768; Fungi - 44; Plants - 189; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Protein Annotations
BioGrid:5732eggNOG:ENOG410XPP8eggNOG:KOG1776EMBL:AC009755
EMBL:AF507018EMBL:CP002686EnsemblPlants:AT3G02260EnsemblPlants:AT3G02260.1
entrez:820398Gene3D:1.25.10.10GeneID:820398Genevisible:Q9SRU2
GO:GO:0005829GO:GO:0008270GO:GO:0009506GO:GO:0009620
GO:GO:0009640GO:GO:0009733GO:GO:0009734GO:GO:0009826
GO:GO:0009926GO:GO:0010311GO:GO:0016020GO:GO:0016021
GO:GO:0048281GO:GO:0048364Gramene:AT3G02260.1hmmpanther:PTHR21725
hmmpanther:PTHR21725:SF1InParanoid:Q9SRU2InterPro:IPR000433InterPro:IPR003126
InterPro:IPR011989InterPro:IPR016024InterPro:IPR017986InterPro:IPR025704
iPTMnet:Q9SRU2KEGG:ath:AT3G02260KO:K10691ncoils:Coil
OMA:FNIIHFQPaxDb:Q9SRU2Pfam:PF00569Pfam:PF13764
Pfam:Q9SRU2Pfscan:PS50135Pfscan:PS51157PRIDE:Q9SRU2
PRO:PR:Q9SRU2PROSITE:PS01357PROSITE:PS50135PROSITE:PS51157
ProteinModelPortal:Q9SRU2Proteomes:UP000006548RefSeq:NP_186875.2scanprosite:PS01357
SMART:SM00291SMART:SM00396STRING:3702.AT3G02260.1SUPFAM:SSF48371
SUPFAM:SSF50978SUPFAM:SSF57850TAIR:AT3G02260tair10-symbols:ASA1
tair10-symbols:BIGtair10-symbols:CRM1tair10-symbols:DOC1tair10-symbols:LPR1
tair10-symbols:TIR3tair10-symbols:UMB1UniGene:At.46446UniProt:Q9SRU2
Coordinates (TAIR10) chr3:-:431152..448489
Molecular Weight (calculated) 567920.00 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.12
Length 5098 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADDLANLCR FLFDDTAFPS LSSSASSDLF SRRLRSDDSI KRGLRSFYLL LRWGVAPIGG DDADSSGKLR FETWSDSQLQ ALVSISQAIL LLSRSLLGTD
0101: LTLNQGLVDQ LEPIVLGVIQ EVMEFSLSFL EKSSFRQNDL KMEINMEILL EIASFDGSEK QYDILPDFSP AEVAELWPAF SGEHDNMDAQ SLVKCTFQGG
0201: RCSNEEKPVD RLLITLMSEC IESDVQAQSV VKSPFQQDCG DLNPFTRHLA VVHLRCVCRL IMVCKELVQL PNMLDEKTVD QAVLDKLSFC LRILKLLGSL
0301: SKDVQSIEND GSLLQAVASF TDAFPKLFRV FFEFTNHTAT EGNIESLSLA LVEGFLNLVQ LIFGKSSVFQ NVQACVAASI VSNLDSSVWR YDGSSCNLTP
0401: PLAYFPRSVI YTLKLIQDLK RQPYHIHDLR VLESEVTYED VSSTVDSVYF HLRQEKIPLL KCFTVEDIMR VIFPSSSQWM DNFFHLVYFL HREGVKLRPK
0501: VERTYSSLRS NSFAEVESQI SHDDEALFGN LFSEGSRSLC SIEPNDQPPV SVSSNLLLQA AKELLNFLRA CILCQEWVPS IYEDGCKKLD TGHIDILLNI
0601: VGCSIEDKAS DGGCMLQDEG RPGHVAFELL LNLLRSRALS DFLESYLFQQ ILVVENSDFN YNDKTLALLA HTLLCRPGLA GAQLRAKIYD GFVSFVTERA
0701: RGICAEALSL KELTACLPSA FHIEILLMAF HLSNEAEKAK FSNLIASCLH KVDTPAGICD GPQLSSWAML ISRLLVLLHH MLLHPNTCPT SLMLDLRSKL
0801: REVRSCGSNL HVTVGDHLSS WASLVARGIT DSWAEDESVS HLMSQMIDFS PHPPTFQNDV STAKTLNLDY GDLSASLCRV LGLWKGKKAG KVEDLLVERY
0901: IFMLSSDIAR INCALDSQPS LHVNYQNVDI SNSVDLISTS HLLVGDINVV GRNIELRNIL IGVLNQLQAA PEQVVEDLGW DYIREGAWLS LLLYFLDGGV
1001: WDYCNKNSCS EIDPFWKECT SVDAKYVAAA EGVVSYLMKT GDIAELLRML SSLVGKYLRV YKKAFLATFS DWNHHGHSSP SLLLLKHTQF GKSLQGEYAK
1101: IGDNSLHLQC IFYLSKLDSL GDGRGSGVLW KVFWEFMVHG FPTSLQTSSA ILLSCILSIR CIVLTINGLL KLGNSKEKFG VDTSVLHQLL DSIMIIKFDQ
1201: VFESFHGKCE EIHQNICAVL QLPDLTELFL MKDMEGFVRD ISAEQIDRSQ VLEGVITKIV DVMDSLSKDS SKSDIFKFYL GVDAVSEHTR EFYELQRGDL
1301: SVFIDSLDYC SLEPVNIKVL NFLVDLLSVA QSPDLRRRVQ QKFIDMDLIS LSGWLERRLL GSFVEEIDGK KTAKGNSLPF REAAMNFINC LVSSTNDLQT
1401: RELQNHLFEA LLISLDTAFL SFDIHMSMSY FHFVLQLARE DNLMKMVLKR TIMLMEKLAA EEKLLPGLKF IFGVIGTLLS NRSPSHGESL CGKSLASYKN
1501: TATGPLVPKL SGTTKKSDTL ALPVDQEGSS ISLECDVTSV DEDEDDGTSD GEVASLDKED EEDANSERYL ASKVCTFTSS GSNFMEQHWY FCYTCDLTVS
1601: KGCCSVCAKV CHRGHRVVYS RSSRFFCDCG AGGVRGSSCQ CLKPRKYNGN GSAPARGTNN FQSFLPLSED ADQLGESDSD VEEDGFGEEN HVVLYIPKET
1701: QYKMSLLLEE LGIEDRVLEL FSSLLPSITS KRDSGLSKEK QVNLGKDKVL SFDTDLLQLK KAYKSGSLDL KIKADYTNSK DLKSLLANGS LVKSLLSVSV
1801: RGRLAVGEGD KVAIFDVGQL IGQATIAPIN ADKANVKPLS RNIVRFEIVH LSFNPVVENY LAVAGLEDCQ ILTLNHRGEV IDRLAVELAL QGAFIRRIDW
1901: VPGSQVQLMV VTNKFVKIYD LSQDSISPTQ YFTLPNDMIV DATLFVASRG RVFLLVLSEQ GNLYRFELSW GGNAGATPLK EIVQIMGKDV TGKGSSVYFS
2001: PTYRLLFISY HDGSSFMGRL SSDATSLTDT SGMFEEESDC KQRVAGLHRW KELLAGSGLF ICFSSVKSNA VLAVSLRGDG VCAQNLRHPT GSSSPMVGIT
2101: AYKPLSKDNV HCLVLHDDGS LQIYSHVRSG VDTDSNFTAE KVKKLGSKIL NNKTYAGAKP EFPLDFFERA FCITADVRLG SDAIRNGDSE GAKQSLASED
2201: GFIESPSPVG FKISVSNPNP DIVMVGIRMH VGTTSASSIP SEVTIFQRSI KMDEGMRCWY DIPFTVAESL LADEDVVISV GPTTSGTALP RIDSLEVYGR
2301: AKDEFGWKEK MDAVLDMEAR VLGHGLLLPG SSKKRALAQS ASMEEQVIAD GLKLLSIYYS VCRPRQEVVL SELKCKQLLE TIFESDRETL LQTTACRVLQ
2401: SVFPRKEIYY QVMFLPNSVK DTMRLLGVVK VTSILSSRLG ILGTGGSIVE EFNAQMRAVS KVALTRKSNF SVFLEMNGSE VVDNLMQVLW GILESEPLDT
2501: PTMNNVVMSS VELIYSYAEC LASQGKDTGV HSVAPAVQLL KALMLFPNES VQTSSRCVLV LAISSRLLQV PFPKQTMLTT DDLVDNVTTP SVPIRTAGGN
2601: THVMIEEDSI TSSVQYCCDG CSTVPILRRR WHCTVCPDFD LCEACYEVLD ADRLPPPHTR DHPMTAIPIE VESLGADTNE IQFSADEVGI SNMLPVVTSS
2701: IPQASTPSIH VLEPGESAEF SASLTDPISI SASKRAVNSL ILSEFLQELS GWMETVSGVQ AIPVMQLFYR LSSAIGGAFM DSSKPEEISL DKLIKWLLGE
2801: INLSKPFAAS TRSSLGEIVI LVFMFFTLML RSWHQPGSDG SSSKLGGSTD VHDRRIVQSS TVVATQSSLH VQERDDFASQ LVRACSCLRN QEFVNYLMNI
2901: LQQLVHVFKS RAANVEARGS SSGSGCGAML TVRRDLPAGN YSPFFSDSYA KAHRADIFVD YHRLLLENVF RLVYTLVRPE KQEKMGEKEK VYRNASSKDL
3001: KLDGFQDVLC SYINNPHTAF VRRYARRLFL HLCGSKTQYY SVRDSWQFSN EVKNLYKHVE KSGGFENNVS YERSVKIVKS LSTIAEVAVA RPRNWQKYCL
3101: RHGDFLSFLL NGVFHFAEES VIQTLKLLNL AFYQGKDVSS SVQKAEATEV VTGSNRSGSQ SVDSKKKKKG EDGHDSGLEK LYVDMEGVVD IFSANCGDLL
3201: RQFIDFFLLE WNSSSVRTEA KSVIYGLWHH GRHSFKESLL AALLQKVRYL PAYGQNIVEY TELVSLLLDK APENNSKQAI NELVDRCLNP DVIRCFFETL
3301: HSQNELIANH PNSRIYSTLG NLVEFDGYYL ESEPCVACSS PDVPYSKMKL ESLKSETKFT DNRIIVKCTG SYTIQSVTMN VHDARKSKSV KVLNLYYNNR
3401: PVSDLSELKN NWSLWKRAKS CHLSFNQTEL KVEFPIPITA CNFMIELDSF YENLQALSLE PLQCPRCSRP VTDKHGICSN CHENAYQCRQ CRNINYENLD
3501: SFLCNECGYS KYGRFEFNFM AKPSFIFDNM ENDEDMKKGL AAIESESENA HKRYQQLLGF KKPLLKIVSS IGETEMDSQH KDTVQQMMAS LPGPSCKINR
3601: KIALLGVLYG EKCKAAFDSV SKSVQTLQGL RRVLMSYLHQ KNSNFSSGAS RCVVSKTPNN CYGCATTFVT QCLEILQVLS KHPRSRKQLV AAGILSELFE
3701: NNIHQGPKTA RAQARAALST FSEGDLSAVN ELNNLVQKKI MYCLEHHRSM DIALATREEM LLLSEVCSLT DEFWESRLRL VFQLLFSSIK LGAKHPAISE
3801: HIILPCLKII SVACTPPKPD TAEKEQTMGK SAPAVQEKDE NAAGVIKYSS ESEENNLNVS QKTRDIQLVS YLEWEKGASY LDFVRRQYKA SQSIRGASQK
3901: SRTHRSDFLA LKYTLRWKRR SSRTSKGGLQ AFELGSWVTE LILSACSQSI RSEMCTLISL LAAQSSPRRY RLINLLIGLL PATLAAGESS AEYFELLFKM
4001: IETQDALLFL TVRGCLTTIC KLISQEVGNI ESLERSLQID ISQGFTLHKL LELLGKFLEV PNIRSRFMRD NLLSHVLEAL IVIRGLIVQK TKLINDCNRR
4101: LKDLLDGLLL ESSENKRQFI RACVSGLQTH AEENKGRTCL FILEQLCNLI CPSKPEAVYM LILNKSHTQE EFIRGSMTKN PYSSAEIGPL MRDVKNKICQ
4201: QLDLLGLLED DYGMELLVAG NIISLDLSIA QVYELVWKKS NQSSTSLTNS ALLASNAAPS RDCPPMTVTY RLQGLDGEAT EPMIKELEED REESQDPEIE
4301: FAIAGAVREY GGLEILLDMI KSLQDDFKSN QEEMVAVLDL LNHCCKIREN RRALLRLGAL SLLLETARRA FSVDAMEPAE GILLIVESLT LEANESDSIS
4401: AAQSALTVSN EETGTWEQAK KIVLMFLERL SHPSGLKKSN KQQRNTEMVA RILPYLTYGE PAAMEALIEH FSPYLQNWSE FDQLQQRHEE DPKDDSIAQQ
4501: AAKQRFTVEN FVRVSESLKT SSCGERLKDI VLENGIIAVA VKHIKEIFAI TGQTGFKSSK EWLLALKLPS VPLILSMLRG LSMGHLPTQT CIDEGGILTL
4601: LHALEGVSGE NDIGARAENL LDTLADKEGK GDGFLGEKVR ALRDATKDEM RRRALRKREE LLQGLGMRQE LSSDGGERIV VSQPILEGFE DVEEEEDGLA
4701: CMVCREGYKL RPSDLLGVYS YSKRVNLGVG NSGSARGECV YTTVSYFNII HFQCHQEAKR ADAALKNPKK EWEGAMLRNN ESLCNSLFPV KGPSVPLAQY
4801: LRYVDQYWDN LNALGRADGS RLRLLTYDIV LMLARFATGA SFSADCRGGG RDSNSRFLPF MFQMARHLLD QGGPVQRTNM ARSVSSYISS SSTSTATAPS
4901: SDSRPLTPGS QLSSTGTEET VQFMMVNSLL SESYESWLQH RRVFLQRGIY HTFMQHAHGR VASRAAEPTS SGGKTQDAET LTGDELLSIV KPMLVYTGMI
5001: EQLQQLFKPK KPVHIEPIKK EGTSSGVELE PWEIVMKEKL LNVKEMIGFS KELISWLDEI NSATDLQEAF DIVGVLADVL SEGVTQCDQF VRSAIDKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)