suba logo
AT3G01500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : carbonic anhydrase 1
Curator
Summary (TAIR10)		 Encodes a putative beta-carbonic anhydrase betaCA1. Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.
Computational
Description (TAIR10)		 carbonic anhydrase 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 2 (TAIR:AT5G14740.1); Has 5133 Blast hits to 5116 proteins in 1526 species: Archae - 36; Bacteria - 3970; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G01500-MONOMERBioCyc:ARA:GQT-476-MONOMERBioCyc:ARA:GQT-483-MONOMERBioCyc:MetaCyc:AT3G01500-MONOMER
BioGrid:6467EC:4.2.1.1eggNOG:COG0288eggNOG:KOG1578
EMBL:AC009325EMBL:AF428284EMBL:AF428459EMBL:AK222039
EMBL:AK226447EMBL:AY056175EMBL:AY062785EMBL:AY081658
EMBL:AY091066EMBL:CP002686EMBL:X65541EnsemblPlants:AT3G01500
EnsemblPlants:AT3G01500.1EnsemblPlants:AT3G01500.2entrez:821134ExpressionAtlas:P27140
Gene3D:3.40.1050.10GeneID:821134Genevisible:P27140GO:GO:0004089
GO:GO:0005886GO:GO:0008270GO:GO:0009409GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009817
GO:GO:0009941GO:GO:0010037GO:GO:0010119GO:GO:0010319
GO:GO:0015976GO:GO:0015979GO:GO:0016020GO:GO:0042742
GO:GO:0048046GO:GO:2000122gramene_pathway:4.2.1.1gramene_pathway:CYANCAT-PWY
hmmpanther:PTHR11002hmmpanther:PTHR11002:SF7HOGENOM:HOG000125183InParanoid:P27140
IntAct:P27140InterPro:IPR001765InterPro:IPR015892KEGG:00910+4.2.1.1
KEGG:ath:AT3G01500KO:K01673ncoils:CoilOMA:CLPAKAK
PANTHER:PTHR11002PaxDb:P27140PaxDb:Q56X90Pfam:PF00484
PhylomeDB:P27140PIR:S28412PRIDE:P27140PRO:PR:P27140
PROSITE:PS00704PROSITE:PS00705ProteinModelPortal:P27140Proteomes:UP000006548
RefSeq:NP_186799.2RefSeq:NP_850490.1RefSeq:NP_850491.1scanprosite:PS00704
scanprosite:PS00705SMART:SM00947SMR:P27140STRING:3702.AT3G01500.2
SUPFAM:SSF53056SWISS-2DPAGE:P27140TAIR:AT3G01500tair10-symbols:ATBCA1
tair10-symbols:ATSABP3tair10-symbols:CA1tair10-symbols:SABP3UniGene:At.21999
UniProt:Q56WK1UniProt:Q56X90
Coordinates (TAIR10) chr3:-:194853..196716
Molecular Weight (calculated) 29505.50 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.03
Length 270 amino acids
Sequence (TAIR10)
(BLAST) 		001: MGTEAYDEAI EALKKLLIEK EELKTVAAAK VEQITAALQT GTSSDKKAFD PVETIKQGFI KFKKEKYETN PALYGELAKG QSPKYMVFAC SDSRVCPSHV
101: LDFQPGDAFV VRNIANMVPP FDKVKYGGVG AAIEYAVLHL KVENIVVIGH SACGGIKGLM SFPLDGNNST DFIEDWVKIC LPAKSKVISE LGDSAFEDQC
201: GRCEREAVNV SLANLLTYPF VREGLVKGTL ALKGGYYDFV KGAFELWGLE FGLSETSSVK DVATILHWKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)