AT2G46090.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Diacylglycerol kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Conserved hypothetical protein CHP00147 (InterPro:IPR005218); BEST Arabidopsis thaliana protein match is: long-chain base (LCB) kinase 1 (TAIR:AT5G23450.2); Has 6078 Blast hits to 6077 proteins in 1657 species: Archae - 15; Bacteria - 4829; Metazoa - 327; Fungi - 124; Plants - 145; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:18950919..18953079 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39657.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRSTCCTPL CPFTAKQPSF LRKQQRITSD RFTFRGGGGG DAAAVVSSSG LRDLVFVVNP QGANGRTAKE WKKLLPHLRS RLGKDCNVSE LLTSGPSHAI 101: DITREAIRDG ADAVIAVGGD GTLHEVVNGF FWEGKPVGYL SGEASRSTAL GLIPLGTGSD FARTFGWNND PCEAVERIAR GMRSRIDVGV IDKEGKDLHY 201: FINVADVHLS AKAGFYASKY KKFGNLCYVI GALQAFMGHH NQDMRIRVNG GEWEIYPQVT ALCVGNAKYF GGGMKITPNA IPGNGNLEVV VLQNFKWYDF 301: VLKLHKLYNG THLSVNNVTS RSVQSIEVEE ITDSGSIYVQ SDGEHLGFLP RKFQVLPGAI DIIS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)