AT2G44350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Citrate synthase family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. | ||||||||||||||||||||
| Computational Description (TAIR10) |
ATCS; FUNCTIONS IN: citrate (SI)-synthase activity, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, tricarboxylic acid cycle; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase active site (InterPro:IPR019810), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: citrate synthase 5 (TAIR:AT3G60100.1); Has 10534 Blast hits to 10528 proteins in 2768 species: Archae - 158; Bacteria - 6911; Metazoa - 258; Fungi - 320; Plants - 178; Viruses - 0; Other Eukaryotes - 2709 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18316673..18320524 | ||||||||||||||||||||
| Molecular Weight (calculated) | 52657.30 Da | ||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF 101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK 201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN 301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV 401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)