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AT2G43710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant stearoyl-acyl-carrier-protein desaturase family protein
Curator
Summary (TAIR10)
Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.
Computational
Description (TAIR10)
SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 10 processes; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 948 Blast hits to 940 proteins in 221 species: Archae - 0; Bacteria - 436; Metazoa - 2; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2646-MONOMERBioGrid:4309BRENDA:1.14.19.2EC:1.14.19.2eggNOG:ENOG410IF20eggNOG:ENOG410XPNSEMBL:AC002333
EMBL:AF395441EMBL:AK230443EMBL:AY048233EMBL:AY094014EMBL:CP002685EMBL:X93461EnsemblPlants:AT2G43710
EnsemblPlants:AT2G43710.1entrez:818973ExpressionAtlas:O22832Gene3D:1.10.620.20GeneID:818973Genevisible:O22832GO:GO:0006633
GO:GO:0006952GO:GO:0009570GO:GO:0045300GO:GO:0046872gramene_pathway:1.14.19.2gramene_pathway:PWY-5147hmmpanther:PTHR31155
hmmpanther:PTHR31155:SF9HOGENOM:HOG000035569InParanoid:O22832IntAct:O22832InterPro:IPR005067InterPro:IPR005803InterPro:IPR009078
InterPro:IPR012348KEGG:ath:AT2G43710KO:K03921OMA:NGWSKWVPaxDb:O22832Pfam:O22832Pfam:PF03405
PhylomeDB:O22832PIR:E84869PIR:S71264PIRSF:PIRSF000346PRIDE:O22832PRO:PR:O22832PROSITE:PS00574
ProteinModelPortal:O22832Proteomes:UP000006548RefSeq:NP_181899.1scanprosite:PS00574SMR:O22832STRING:3702.AT2G43710.1SUPFAM:SSF47240
TAIR:AT2G43710tair10-symbols:FAB2tair10-symbols:SSI2UniGene:At.22018UniPathway:UPA00199UniProt:O22832
Coordinates (TAIR10) chr2:+:18120107..18122495
Molecular Weight (calculated) 45695.40 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.53
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)