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AT2G43090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aconitase/3-isopropylmalate dehydratase protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aconitase/3-isopropylmalate dehydratase protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: isopropylmalate isomerase 1 (TAIR:AT3G58990.1); Has 8413 Blast hits to 8412 proteins in 2279 species: Archae - 351; Bacteria - 5415; Metazoa - 18; Fungi - 351; Plants - 71; Viruses - 0; Other Eukaryotes - 2207 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43090-MONOMERBRENDA:4.2.1.33EC:4.2.1.33eggNOG:COG0066eggNOG:ENOG410IQBYEMBL:AC004450EMBL:AC006224
EMBL:AY035158EMBL:AY063029EMBL:AY087084EMBL:CP002685EnsemblPlants:AT2G43090EnsemblPlants:AT2G43090.1entrez:818911
ExpressionAtlas:Q9ZW85Gene3D:3.20.19.10GeneID:818911Genevisible:Q9ZW85GO:GO:0003861GO:GO:0009098GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009651GO:GO:0009658GO:GO:0019761GO:GO:0048229hmmpanther:PTHR11670
HOGENOM:HOG000222940InParanoid:Q9ZW85InterPro:IPR000573InterPro:IPR015928InterPro:IPR015937KEGG:00290+4.2.1.33OMA:PFLRFNS
PANTHER:PTHR11670PaxDb:Q9ZW85Pfam:PF00694Pfam:Q9ZW85PhylomeDB:Q9ZW85PIR:H84861PRIDE:Q9ZW85
PRO:PR:Q9ZW85ProteinModelPortal:Q9ZW85Proteomes:UP000006548RefSeq:NP_181837.1SMR:Q9ZW85STRING:3702.AT2G43090.1SUPFAM:SSF52016
TAIR:AT2G43090UniGene:At.21303UniGene:At.9183UniPathway:UPA00048UniProt:Q9ZW85
Coordinates (TAIR10) chr2:+:17918957..17919712
Molecular Weight (calculated) 26791.70 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.12
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASLQSANP TLSRTLASPN KPSSFATFRS PFLRFNSTSV ASNFKPLVSR EASSSFVTRS AAEPQERKTF HGLCYVVGDN IDTDQIIPAE FLTLVPSNPE
101: EYEKLGSYAL VGLPASYKER FVQPGEMKTK YSIIIGGENF GCGSSREHAP VCLGAAGAKA VVAQSYARIF FRNSVATGEV YPLDSEVRVC DECTTGDVAT
201: VELREGDSIL INHTTGKEYK LKPIGDAGPV IDAGGIFAYA RKAGMIPSAA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)