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AT2G43030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, bacterial/organelle-type (InterPro:IPR019927), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein L3 plastid (TAIR:AT3G17465.1); Has 8745 Blast hits to 8744 proteins in 2878 species: Archae - 254; Bacteria - 5494; Metazoa - 134; Fungi - 132; Plants - 92; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0087eggNOG:KOG3141EMBL:AK226198EMBL:BT044611EnsemblPlants:AT2G43030EnsemblPlants:AT2G43030.1entrez:818905
ExpressionAtlas:Q0WWY5ExpressionAtlas:Q9SKX4GeneID:818905GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT2G43030.1
HAMAP:MF_01325_Bhmmpanther:PTHR11229hmmpanther:PTHR11229:SF5InterPro:IPR000597InterPro:IPR009000InterPro:IPR019926InterPro:IPR019927
KEGG:ath:AT2G43030KO:K02906OMA:NVVMIKGPANTHER:PTHR11229Pfam:PF00297Pfam:Q9SKX4PhylomeDB:Q0WWY5
PROSITE:PS00474RefSeq:NP_181831.1scanprosite:PS00474SMR:Q0WWY5STRING:3702.AT2G43030.1SUPFAM:SSF50447TAIR:AT2G43030
TIGRfam:TIGR03625TIGRFAMs:TIGR03625UniGene:At.28215UniProt:Q0WWY5UniProt:Q9SKX4
Coordinates (TAIR10) chr2:+:17894898..17895713
Molecular Weight (calculated) 29365.40 Da
IEP (calculated) 11.17
GRAVY (calculated) -0.17
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIAMAVVSF PSLLNKTTLS SSLFTPTFLP AKSSSLLIKS SPKTRFVVSS SMEAGIGVMG SKLGMMSFFE EDGTVVPVTV VGFREGNIVT QIKTLATDGY
101: DAVQIGYRRV RDKKLTKPET GHLQKAGTIP MRHLQEFRLT NIEGFEPNQK LVFDEIFKEG DLVDVAGTTI GKGFQGGIKR HHFKRGQMTH GSKSHRALGS
201: IGAGTTPGRV YKGKKMPGRM GGTRTKIRKL KIVKVDKELN VVMIKGALPG KPGNLLRITP AKIVGVNIPK N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)