suba logo
AT2G38020.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12589039 (2003): plant-type vacuole
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuoleless1 (VCL1)
Curator
Summary (TAIR10)
necessary for proper vacuole formation and morphogenesis in Arabidopsis
Computational
Description (TAIR10)
VACUOLELESS 1 (VCL1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vps16, N-terminal (InterPro:IPR006926), Vacuolar protein sorting-associated protein 16 (InterPro:IPR016534), Vps16, C-terminal (InterPro:IPR006925); Has 461 Blast hits to 410 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Protein Annotations
BioGrid:3724eggNOG:ENOG410XQ8XeggNOG:KOG2280EMBL:AF359240EMBL:AK316906EMBL:AY048248EMBL:AY139799
EMBL:CP002685EnsemblPlants:AT2G38020EnsemblPlants:AT2G38020.1EnsemblPlants:AT2G38020.2entrez:818380ExpressionAtlas:Q93VQ0Gene3D:2.130.10.10
GeneID:818380Genevisible:Q93VQ0GO:GO:0003779GO:GO:0005765GO:GO:0005768GO:GO:0006886GO:GO:0007033
GO:GO:0009705GO:GO:0016197GO:GO:0030897GO:GO:0031902GO:GO:0032889GO:GO:0035542GO:GO:0043234
GO:GO:0045992GO:GO:0051469hmmpanther:PTHR12811hmmpanther:PTHR12811:SF0HOGENOM:HOG000177385InParanoid:Q93VQ0InterPro:IPR006925
InterPro:IPR006926InterPro:IPR015943InterPro:IPR016534InterPro:IPR017986KEGG:ath:AT2G38020OMA:IRDYHIGPANTHER:PTHR12811:SF0
PaxDb:Q93VQ0Pfam:PF04840Pfam:PF04841Pfam:Q93VQ0PhylomeDB:Q93VQ0PIRSF:PIRSF007949PRIDE:Q93VQ0
PRO:PR:Q93VQ0ProteinModelPortal:Q93VQ0Proteomes:UP000006548RefSeq:NP_001078020.1RefSeq:NP_565879.1SMR:Q93VQ0STRING:3702.AT2G38020.1
SUPFAM:SSF50978TAIR:AT2G38020tair10-symbols:EMB258tair10-symbols:MANtair10-symbols:VCL1UniGene:At.21726UniGene:At.69624
UniGene:At.72560UniProt:Q93VQ0
Coordinates (TAIR10) chr2:-:15910098..15914190
Molecular Weight (calculated) 96637.70 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.09
Length 858 amino acids
Sequence (TAIR10)
(BLAST)
001: MANVSVAAEW QLLYDRYYRK PEIYQMKWKH VDLSRNKVAC ASFGGPIAVI RDDSKIVQLY AESALRKLRI FNSAGILLSE TVWKHPGGRL IGMSWSDDQT
101: LICIVQDGTI YRYNIHAELI EPNMSMGQEC FEQNVVECVF WGNGVVCLTE GGQLICIFDF KTMKPSKLPD VPGLAEDDLL QPICLTVREP KYTMSGIAEV
201: LVAVGDDIFV VEEDMVQTIR FDEPSVDDSE MQNDDSGNLI GVVQKMIVSP NGKFLTLFTH DGRIVVVDME TKQIAIDYSC ESALPPQQMA WCGMDSVLLY
301: WDEDLMMVGP VGDPVHYFYD EPIILIPECD GVRILSNTNL EFLQRVPDST ESIFKIGSTS PAALLYDALD HFDRRSAKAD ENLRLIRSSL SEAVESCIDA
401: AGHEFDVTRQ RALLRAASYG QAFCSNFQRE RVQETCRTLR VLNAVRDPAI GIPLSIQQYK LLTPVVLISR LINANCHLLA LRISEYLDMN KEVVIMHWAC
501: AKITASPSTP DSHLLEILLD KLQLCKGISY AAVATHADNC GRRKLAAMLV EHEPRSTKQV PLLLSIGEED TALVKATESG DTDLVYLVIF HIWQKRPPLE
601: FFAMIQGRVL ARDLFVAYAR CHKHEFLKDF FLSTGQIHEV AFLLWKESWD MGKNPMASKG SPLHGPRIKL IEKARNLFSQ TKEHTFESKA AEEHAKLLKI
701: QHELEASTKQ AIFVDSSIND TIRTCIVLGN NRAAIKVKTE FKVSDKRWYW LKAFALATIK DWAALEKFSK EKRPPMGFRP FVEACIDADE KAEALKYIPK
801: LSDLVERGEA YARIGMAKEA ADCAAQANDG GELLERFRKT FVQNAIFDTL LMPFQGAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)