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AT2G36160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S11 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2901 species: Archae - 250; Bacteria - 4863; Metazoa - 587; Fungi - 162; Plants - 736; Viruses - 0; Other Eukaryotes - 2176 (source: NCBI BLink).
Protein Annotations
BioGrid:3532eggNOG:COG0100eggNOG:KOG0407EMBL:AC007135
EMBL:AY088120EMBL:CP002685EnsemblPlants:AT2G36160EnsemblPlants:AT2G36160.1
entrez:818188Gene3D:3.30.420.80GeneID:818188Genevisible:Q9SIH0
GO:GO:0003735GO:GO:0005774GO:GO:0005829GO:GO:0005886
GO:GO:0006412GO:GO:0009506GO:GO:0009507GO:GO:0016020
GO:GO:0022626GO:GO:0022627Gramene:AT2G36160.1HAMAP:MF_01310
hmmpanther:PTHR11759hmmpanther:PTHR11759:SF12HOGENOM:HOG000111598InParanoid:Q9SIH0
InterPro:IPR001971InterPro:IPR018102KEGG:ath:AT2G36160KO:K02955
OMA:KWGVAHIPANTHER:PTHR11759PaxDb:Q9SIH0Pfam:PF00411
Pfam:Q9SIH0PhylomeDB:Q9SIH0PIR:D84777PIRSF:PIRSF002131
PRIDE:Q9SIH0PRO:PR:Q9SIH0PROSITE:PS00054ProteinModelPortal:Q9SIH0
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_181158.1scanprosite:PS00054SMR:Q9SIH0
STRING:3702.AT2G36160.1SUPFAM:SSF53137TAIR:AT2G36160UniGene:At.37582
UniProt:Q9SIH0
Coordinates (TAIR10) chr2:+:15169925..15171159
Molecular Weight (calculated) 16257.80 Da
IEP (calculated) 11.30
GRAVY (calculated) -0.47
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)