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AT2G33450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L28 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L28 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 3594 Blast hits to 3594 proteins in 1265 species: Archae - 0; Bacteria - 2589; Metazoa - 1; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).
Protein Annotations
BioGrid:3257eggNOG:COG0227eggNOG:ENOG410IZH1EMBL:AC002332EMBL:AY072373EMBL:AY087094EMBL:AY114618
EMBL:CP002685EnsemblPlants:AT2G33450EnsemblPlants:AT2G33450.1entrez:817910GeneID:817910Genevisible:O22795GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016020Gramene:AT2G33450.1
HAMAP:MF_00373hmmpanther:PTHR13528hmmpanther:PTHR13528:SF6HOGENOM:HOG000040462InParanoid:O22795IntAct:O22795InterPro:IPR001383
InterPro:IPR026569KEGG:ath:AT2G33450KO:K02902MINT:MINT-8059980OMA:MATQGAWPANTHER:PTHR13528PaxDb:O22795
Pfam:O22795Pfam:PF00830PhylomeDB:O22795PIR:F84745PRIDE:O22795PRO:PR:O22795ProteinModelPortal:O22795
Proteomes:UP000006548RefSeq:NP_565765.1SMR:O22795STRING:3702.AT2G33450.1SUPFAM:SSF143800TAIR:AT2G33450TIGRfam:TIGR00009
TIGRFAMs:TIGR00009UniGene:At.27539UniProt:O22795
Coordinates (TAIR10) chr2:+:14173620..14174380
Molecular Weight (calculated) 16033.80 Da
IEP (calculated) 11.82
GRAVY (calculated) -0.37
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTMATQGAW LRMTSSAKSM TKSTVTSKEL GFLTSQLSGL RISYTPSDVI NRISLPSFPG IQPIVARRIC PFTGKKANRA NKVSFSNHKT KKLQFVNLQY
101: KRVWWEAGKR FVKLRLSTKA LKTIEKNGLD AVAKKAGIDL RKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)