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AT2G32720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19054355 (2009): endoplasmic reticulum
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome B5 isoform B
Curator
Summary (TAIR10)
member of Cytochromes b5
Computational
Description (TAIR10)
cytochrome B5 isoform B (CB5-B); CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform D (TAIR:AT5G48810.1); Has 4197 Blast hits to 4166 proteins in 470 species: Archae - 2; Bacteria - 26; Metazoa - 1028; Fungi - 1701; Plants - 800; Viruses - 3; Other Eukaryotes - 637 (source: NCBI BLink).
Protein Annotations
BioGrid:3179eggNOG:COG5274eggNOG:KOG0537EMBL:AC003974
EMBL:AK227415EMBL:AY128405EMBL:BT000085EMBL:CP002685
EnsemblPlants:AT2G32720EnsemblPlants:AT2G32720.1entrez:817832Gene3D:3.10.120.10
GeneID:817832Genevisible:O48845GO:GO:0005783GO:GO:0005789
GO:GO:0016021GO:GO:0020037GO:GO:0043447GO:GO:0046872
GO:GO:0055114Gramene:AT2G32720.1hmmpanther:PTHR19359hmmpanther:PTHR19359:SF26
HOGENOM:HOG000039853InParanoid:O48845IntAct:O48845InterPro:IPR001199
InterPro:IPR018506KEGG:ath:AT2G32720OMA:VAKHTSKPaxDb:O48845
Pfam:O48845Pfam:PF00173Pfscan:PS50255PhylomeDB:O48845
PIR:T00796PRIDE:O48845PRINTS:PR00363PRO:PR:O48845
PROSITE:PS00191PROSITE:PS50255ProteinModelPortal:O48845Proteomes:UP000006548
Reactome:R-ATH-196836RefSeq:NP_180831.1scanprosite:PS00191SMART:SM01117
SMR:O48845STRING:3702.AT2G32720.1SUPFAM:SSF55856TAIR:AT2G32720
tair10-symbols:ATCB5-Btair10-symbols:B5 #4tair10-symbols:CB5-BTMHMM:TMhelix
UniGene:At.19477UniProt:O48845
Coordinates (TAIR10) chr2:-:13877013..13878447
Molecular Weight (calculated) 15016.80 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.38
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)