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AT2G30200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding; FUNCTIONS IN: binding, transferase activity, [acyl-carrier-protein] S-malonyltransferase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Malonyl CoA-acyl carrier protein transacylase (InterPro:IPR004410), Acyl transferase domain (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 16466 Blast hits to 15045 proteins in 2783 species: Archae - 4; Bacteria - 12057; Metazoa - 203; Fungi - 1221; Plants - 66; Viruses - 0; Other Eukaryotes - 2915 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G30200-MONOMEReggNOG:COG0331eggNOG:KOG2926EMBL:AC004165EMBL:AY091077EMBL:AY122949EMBL:AY735592
EMBL:AY924753EMBL:CP002685EnsemblPlants:AT2G30200EnsemblPlants:AT2G30200.1entrez:817570ExpressionAtlas:Q8RU07Gene3D:3.40.366.10
GeneID:817570GO:GO:0004314GO:GO:0009507GO:GO:0009570Gramene:AT2G30200.1gramene_pathway:2.3.1.39gramene_pathway:PWY-4381
hmmpanther:PTHR10982HOGENOM:HOG000036504InterPro:IPR001227InterPro:IPR004410InterPro:IPR014043InterPro:IPR016035InterPro:IPR016036
InterPro:IPR020801KEGG:00061+2.3.1.39KEGG:ath:AT2G30200KO:K00645ncoils:CoilOMA:FHCALMQPfam:PF00698
PhylomeDB:Q8RU07PIR:T00580Proteomes:UP000006548RefSeq:NP_565697.1SMART:SM00827SMR:Q8RU07STRING:3702.AT2G30200.1
SUPFAM:SSF52151SUPFAM:SSF55048TAIR:AT2G30200TIGRfam:TIGR00128TIGRFAMs:TIGR00128UniGene:At.38390UniProt:Q8RU07
Coordinates (TAIR10) chr2:-:12883162..12885482
Molecular Weight (calculated) 41524.80 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.05
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLLHRTIL LTSPSHSLIR RTSLSAMATT ASSSLLLPSI SLNNLSSSKN ASFGFAAKNL SRSRISMSVS AGSQSTTVHD SLFADYKPTS AFLFPGQGAQ
101: AVGMGKESQS VGAAGELYKK ANDILGYDLL DICVNGPKEK LDSTVISQPA IYVTSLAAVE LLRVREGGEQ IINSVDVTCG LSLGEYTALA FAGAFSFEDG
201: LKLVKLRGEA MQAAADAAKS AMVSIIGLDS EKVQQLCDAA NQEVDEADKV QIANYLCPGN YAVSGGLKGI EVVEAKAKSF KARMTVRLAV AGAFHTSFME
301: PAVSRLEAAL AATEIRSPRI PVISNVDAQP HADPDTIKKI LARQVTSPVQ WETTVKTLLS KGLKSSYELG PGKVIAGIFK RVDKSASFEN ISA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)