suba logo
AT2G29360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 124543 Blast hits to 124288 proteins in 3623 species: Archae - 1000; Bacteria - 81334; Metazoa - 5904; Fungi - 6580; Plants - 2878; Viruses - 5; Other Eukaryotes - 26842 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29360-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC004561EMBL:AY045613EMBL:AY086609EMBL:AY090333
EMBL:CP002685EnsemblPlants:AT2G29360EnsemblPlants:AT2G29360.1entrez:817485
Gene3D:3.40.50.720GeneID:817485Genevisible:Q9ZW19GO:GO:0016491
Gramene:AT2G29360.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF641IntAct:Q9ZW19
InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT2G29360
KO:K08081OMA:ESVEQSWPANTHER:PTHR24322PaxDb:Q9ZW19
Pfam:PF00106Pfam:Q9ZW19PhylomeDB:Q9ZW19PIR:D84695
PRIDE:Q9ZW19PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9ZW19
PROSITE:PS00061ProteinModelPortal:Q9ZW19Proteomes:UP000006548RefSeq:NP_180497.1
scanprosite:PS00061SMR:Q9ZW19STRING:3702.AT2G29360.1SUPFAM:SSF51735
TAIR:AT2G29360UniGene:At.12681UniProt:Q9ZW19
Coordinates (TAIR10) chr2:+:12603849..12605121
Molecular Weight (calculated) 29187.00 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.01
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTGESLRD KPRWSLVGMT ALVTGGSKGI GEAVVEELAT LGARIHTCAR DETQLQESLR KWQAKGFQVT TSVCDVSSRD KREKLMETVS TIFEGKLNIL
101: VNNVGTCIVK PTLQHTAEDF SFTMATNLES AFHLSQLAHP LLKASGSGSI VLISSVSGVV HVNGASIYGV SKGAMNQLGR NLACEWASDN IRTNSVCPWF
201: IETPLVTESL SNEEFRKEVE SRPPMGRVGE VNEVSSLVAF LCLPAASYIT GQTICVDGGF TVNGFSFKPL P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)