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AT2G27290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1279)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1279); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 214 Blast hits to 212 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411243XeggNOG:KOG4526EMBL:AC006233EMBL:AK226958
EMBL:BT024592EMBL:CP002685EnsemblPlants:AT2G27290EnsemblPlants:AT2G27290.1
entrez:817272GeneID:817272GO:GO:0009507GO:GO:0009535
Gramene:AT2G27290.1hmmpanther:PTHR21377hmmpanther:PTHR21377:SF3InterPro:IPR009688
KEGG:ath:AT2G27290OMA:SWIGKIRPfam:PF06916PhylomeDB:Q9XIN6
PIR:B84671Proteomes:UP000006548RefSeq:NP_565645.1STRING:3702.AT2G27290.1
TAIR:AT2G27290UniGene:At.38789UniProt:Q9XIN6
Coordinates (TAIR10) chr2:-:11678586..11679765
Molecular Weight (calculated) 21761.20 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.26
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMMLLQIPP SSSLLNTRNL QIRFFHSSVS ASSKKFRCRA VREKAEDIDK NISPPSSSPP PPSAEEVTKK YGLEVGLWKI LSSKDDEGSD GDNKKKKSKT
101: DEAKELLAKY GGAYLATSIT LSLISFSLCY VLVTSGVDVQ ALLLKVGIST NETGEKVGAF ALAYAAHKAA SPIRFPPTVA LTPIVANWIG KKVDKEKDDD
201: K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)