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AT2G25840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotidylyl transferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovule abortion 4 (OVA4); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9074 Blast hits to 9053 proteins in 2715 species: Archae - 101; Bacteria - 5434; Metazoa - 147; Fungi - 137; Plants - 44; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G25840-MONOMERBioCyc:ARA:GQT-1496-MONOMEREC:6.1.1.2eggNOG:COG0180eggNOG:KOG2713EMBL:AC005395EMBL:AY081299
EMBL:BT001221EMBL:CP002685EnsemblPlants:AT2G25840EnsemblPlants:AT2G25840.1entrez:817126ExpressionAtlas:Q8RXE9Gene3D:3.40.50.620
GeneID:817126Genevisible:Q8RXE9GO:GO:0004830GO:GO:0005524GO:GO:0005739GO:GO:0006436GO:GO:0009507
gramene_pathway:6.1.1.2gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00140_Bhmmpanther:PTHR10055hmmpanther:PTHR10055:SF9HOGENOM:HOG000059940InterPro:IPR001412
InterPro:IPR002305InterPro:IPR002306InterPro:IPR014729InterPro:IPR024109KEGG:00970+6.1.1.2KEGG:ath:AT2G25840KO:K01867
PANTHER:PTHR10055PaxDb:Q8RXE9Pfam:PF00579PhylomeDB:Q8RXE9PIR:D84653PRIDE:Q8RXE9PRINTS:PR01039
PRO:PR:Q8RXE9PROSITE:PS00178ProteinModelPortal:Q8RXE9Proteomes:UP000006548RefSeq:NP_850070.1scanprosite:PS00178SMR:Q8RXE9
STRING:3702.AT2G25840.2SUPFAM:SSF52374TAIR:AT2G25840tair10-symbols:OVA4TIGRfam:TIGR00233TIGRFAMs:TIGR00233UniGene:At.13048
UniProt:Q8RXE9
Coordinates (TAIR10) chr2:+:11021924..11025158
Molecular Weight (calculated) 45302.60 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.21
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHATSLSHF LILSSSRFSR LGSLTRLLSK PTSLSGSFSS ISVTGQGFRC CCSVATDDTS PSVKKRVVSG VQPTGSVHLG NYLGAIKNWV ALQDTYETLF
101: IIVDHHAITL PYDTRQLGKA TTDTAALYLA CGIDVSKASV FVQSHVPAHV ELMWLLCSST PIGWLQKMIQ FKEKSRKEGV ENASVGLFTY PDLMTADILL
201: YQSDFVPVGE DQKQHIELAR EIAQRVNHLY GGKKWKKLGG RGGSLFKIPE PLIPQAGARV MSLTDGLSKM SKSAPSDQSR INLLDSKDLI VDKIKRCKTD
301: SFAGLEFDNA ERPECNNLLS IYQIVSGKKK EEVMEECKDM SWGTFKPLLA DALIEHLSPI QARYQEIIAE PEYLDKILSE GADRAEELGA VTMRNMYQAM
401: GYYQRRRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)